miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 136861 0.66 0.805832
Target:  5'- gCCUgGGACGCg-GACCaGGGCccGCGGGa -3'
miRNA:   3'- -GGGgUCUGUGgaUUGGgCUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 108334 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 66077 0.66 0.805832
Target:  5'- aUCCCGGACACCccgGacgugcagucgcACCCGGGgCucuuCGGGg -3'
miRNA:   3'- -GGGGUCUGUGGa--U------------UGGGCUC-Gc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 64489 0.66 0.822748
Target:  5'- gCCguGGCACCgGACCCccGCGCGc- -3'
miRNA:   3'- gGGguCUGUGGaUUGGGcuCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 39537 0.66 0.817739
Target:  5'- gCCCCAGcuccggccGCGCCUccGGCCCcGGCGgagcccgcccucgccUGGGg -3'
miRNA:   3'- -GGGGUC--------UGUGGA--UUGGGcUCGC---------------GCCC- -5'
23586 5' -58.5 NC_005261.1 + 102287 0.66 0.822748
Target:  5'- -gCCGGGCucggGCCUGggcGCCCGcugggcugcGGCGCuGGGg -3'
miRNA:   3'- ggGGUCUG----UGGAU---UGGGC---------UCGCG-CCC- -5'
23586 5' -58.5 NC_005261.1 + 19565 0.66 0.822748
Target:  5'- gCCC-GcCGCCcucagcCCCGAGCGCGcGGc -3'
miRNA:   3'- gGGGuCuGUGGauu---GGGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 17627 0.66 0.814368
Target:  5'- gCCCCAcGGCGCCgAGgCCGcaGGCGaCGGc -3'
miRNA:   3'- -GGGGU-CUGUGGaUUgGGC--UCGC-GCCc -5'
23586 5' -58.5 NC_005261.1 + 102456 0.66 0.80497
Target:  5'- gCCCgCGGGCcuCCUGucucgGCCCGAGCcgccuucGCGGc -3'
miRNA:   3'- -GGG-GUCUGu-GGAU-----UGGGCUCG-------CGCCc -5'
23586 5' -58.5 NC_005261.1 + 109623 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 75799 0.66 0.822748
Target:  5'- gCCCGGcgaccggcuCGCgCUGGCCucggCGGGCGCGGa -3'
miRNA:   3'- gGGGUCu--------GUG-GAUUGG----GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 60964 0.66 0.805832
Target:  5'- aUgCAGACGCCgc-CCgCGAGCGCGc- -3'
miRNA:   3'- gGgGUCUGUGGauuGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 134757 0.66 0.805832
Target:  5'- gCCCCGcuGGCGCgguACUCGAcGCGCGGc -3'
miRNA:   3'- -GGGGU--CUGUGgauUGGGCU-CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 53798 0.66 0.814368
Target:  5'- gCCCGGGgGCUggucGCCggaGGGCGCGGc -3'
miRNA:   3'- gGGGUCUgUGGau--UGGg--CUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 10396 0.66 0.805832
Target:  5'- gCCCCGuccGCugCUcgcGGCCgCGAGCGCGa- -3'
miRNA:   3'- -GGGGUc--UGugGA---UUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 123209 0.66 0.809264
Target:  5'- gCCCCcGGCACCcgccgacAACuccuccucccgcgcuCCGGGCGCGGc -3'
miRNA:   3'- -GGGGuCUGUGGa------UUG---------------GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 27658 0.66 0.805832
Target:  5'- -gCCGG-CACgUGGgCCgugGAGCGCGGGu -3'
miRNA:   3'- ggGGUCuGUGgAUUgGG---CUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 65164 0.66 0.805832
Target:  5'- cUCCUGGcgaacacguGCGCCUu-CCUaGGCGCGGGg -3'
miRNA:   3'- -GGGGUC---------UGUGGAuuGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 95328 0.66 0.814368
Target:  5'- gCCCCGGAgCGCCcgggucacGugCCGAGC-CGGc -3'
miRNA:   3'- -GGGGUCU-GUGGa-------UugGGCUCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 77964 0.66 0.821917
Target:  5'- aCCCCGGGCGCCUcuucacggccgccGcuCCCGc-CGCGGcGg -3'
miRNA:   3'- -GGGGUCUGUGGA-------------Uu-GGGCucGCGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.