miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 109652 1.11 0.001365
Target:  5'- gCCCCAGACACCUAACCCGAGCGCGGGu -3'
miRNA:   3'- -GGGGUCUGUGGAUUGGGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 71619 0.83 0.106391
Target:  5'- gCCCGGGCGCg-GGCCCGGGCgGCGGGa -3'
miRNA:   3'- gGGGUCUGUGgaUUGGGCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 13026 0.83 0.111963
Target:  5'- cCCCCAG-CACCacgAGCCaGGGCGCGGGg -3'
miRNA:   3'- -GGGGUCuGUGGa--UUGGgCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 102766 0.82 0.11992
Target:  5'- aCCCCGGgacgcgcgcgcgccGCGCCUAGCCCGcGGgGCGGGc -3'
miRNA:   3'- -GGGGUC--------------UGUGGAUUGGGC-UCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27780 0.82 0.120836
Target:  5'- gCCCAGGCACCcaaacGCCCG-GUGCGGGa -3'
miRNA:   3'- gGGGUCUGUGGau---UGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 73208 0.81 0.158835
Target:  5'- gCCCCGGGCGCCUcgaggggcgcgguGGCCgCGAGCGCGa- -3'
miRNA:   3'- -GGGGUCUGUGGA-------------UUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 83875 0.81 0.159229
Target:  5'- -gCCGGACGCCgggucAGCuCUGAGCGCGGGg -3'
miRNA:   3'- ggGGUCUGUGGa----UUG-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 81270 0.81 0.159229
Target:  5'- uCCCCGGcCGCCUGcgcgaGCCgGAGCGCGGc -3'
miRNA:   3'- -GGGGUCuGUGGAU-----UGGgCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 69270 0.8 0.180093
Target:  5'- aCCCCGGcgagccgcccGCGCC-GACCCcGGCGCGGGg -3'
miRNA:   3'- -GGGGUC----------UGUGGaUUGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 47446 0.8 0.184547
Target:  5'- uCCgaCAGGCGCCcGGCCCGcuuGCGCGGGg -3'
miRNA:   3'- -GGg-GUCUGUGGaUUGGGCu--CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 67157 0.79 0.198495
Target:  5'- gCCCGGACGCCccGCCCGccGCGCGGcGg -3'
miRNA:   3'- gGGGUCUGUGGauUGGGCu-CGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 75467 0.78 0.226994
Target:  5'- uUCCAGGCGCCgggcggcggcgcgGGCCgcuaCGAGCGCGGGg -3'
miRNA:   3'- gGGGUCUGUGGa------------UUGG----GCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 74064 0.78 0.229157
Target:  5'- gCCCGGAcCACCUGcACgCGAuGCGCGGGc -3'
miRNA:   3'- gGGGUCU-GUGGAU-UGgGCU-CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 79948 0.77 0.269884
Target:  5'- cCCCCGGcGCGCC-GGCCCcguGAGCGCGGc -3'
miRNA:   3'- -GGGGUC-UGUGGaUUGGG---CUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 90016 0.77 0.276156
Target:  5'- gCCUgcuGCGCCUGGCCCGGGaGCGGGg -3'
miRNA:   3'- gGGGuc-UGUGGAUUGGGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 60161 0.77 0.276156
Target:  5'- -gCCAG-CGCCUGGgCCG-GCGCGGGg -3'
miRNA:   3'- ggGGUCuGUGGAUUgGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 96707 0.76 0.280616
Target:  5'- aCCCAGcagcgaguuggcggGCACC--ACCCGGGCGCGGc -3'
miRNA:   3'- gGGGUC--------------UGUGGauUGGGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 52839 0.76 0.282544
Target:  5'- gCUCgCGGGCGCCUAccagaaGCCCGAGgGCGGcGg -3'
miRNA:   3'- -GGG-GUCUGUGGAU------UGGGCUCgCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 34310 0.76 0.288394
Target:  5'- --gCAGACGCCgcGCCCGAccuggcgGCGCGGGu -3'
miRNA:   3'- gggGUCUGUGGauUGGGCU-------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 60398 0.76 0.289049
Target:  5'- cCUCCAuGGCGCCgggccGGCCCGGGCcCGGGg -3'
miRNA:   3'- -GGGGU-CUGUGGa----UUGGGCUCGcGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.