Results 1 - 20 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 5' | -58.5 | NC_005261.1 | + | 137675 | 0.66 | 0.839008 |
Target: 5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3' miRNA: 3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 127888 | 0.66 | 0.839008 |
Target: 5'- gCgCCGG-CGCCcgucgGGCCCGGGCcUGGGc -3' miRNA: 3'- -GgGGUCuGUGGa----UUGGGCUCGcGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 54465 | 0.66 | 0.839008 |
Target: 5'- gCUCGGGCGCUgcGACCCGGcCGUGGc -3' miRNA: 3'- gGGGUCUGUGGa-UUGGGCUcGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 40798 | 0.66 | 0.839008 |
Target: 5'- gCCCAGAC-CCgcGCCCaAGgGCaGGc -3' miRNA: 3'- gGGGUCUGuGGauUGGGcUCgCGcCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 109864 | 0.66 | 0.839008 |
Target: 5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3' miRNA: 3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 94990 | 0.66 | 0.839008 |
Target: 5'- gCCCCGcgcGCGCCccGCCCugcGGgGCGGGc -3' miRNA: 3'- -GGGGUc--UGUGGauUGGGc--UCgCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 3346 | 0.66 | 0.839008 |
Target: 5'- aCCaCCGaACGCacagcaggGGCCCGcgggGGCGCGGGc -3' miRNA: 3'- -GG-GGUcUGUGga------UUGGGC----UCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 84845 | 0.66 | 0.839008 |
Target: 5'- gCCCAG-CACC--ACCgCGGGcCGCGuGGc -3' miRNA: 3'- gGGGUCuGUGGauUGG-GCUC-GCGC-CC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 72846 | 0.66 | 0.839008 |
Target: 5'- gCCaGGGCGCCagcGCCCaGGCGUGGa -3' miRNA: 3'- gGGgUCUGUGGau-UGGGcUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 96935 | 0.66 | 0.839008 |
Target: 5'- aCCCgAGACGCCca---CGGGCgcaucgGCGGGg -3' miRNA: 3'- -GGGgUCUGUGGauuggGCUCG------CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 132742 | 0.66 | 0.839008 |
Target: 5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3' miRNA: 3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 4736 | 0.66 | 0.839008 |
Target: 5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3' miRNA: 3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 109253 | 0.66 | 0.839008 |
Target: 5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3' miRNA: 3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 32999 | 0.66 | 0.839008 |
Target: 5'- gCCgCAGAUcacggccgcgGCCgcgGCCCGcGCgGCGGGa -3' miRNA: 3'- -GGgGUCUG----------UGGau-UGGGCuCG-CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 28225 | 0.66 | 0.839008 |
Target: 5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3' miRNA: 3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 4545 | 0.66 | 0.838212 |
Target: 5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3' miRNA: 3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 109062 | 0.66 | 0.838212 |
Target: 5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3' miRNA: 3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 63227 | 0.66 | 0.834202 |
Target: 5'- aCUCCAGggGCgggucguucuuggcgAUCUGcACCCG-GCGCGGGc -3' miRNA: 3'- -GGGGUC--UG---------------UGGAU-UGGGCuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 127695 | 0.66 | 0.834202 |
Target: 5'- gCCCCGGcgGCGCCggagGagcugcgcguggccuGCCUGGuaGCGGGa -3' miRNA: 3'- -GGGGUC--UGUGGa---U---------------UGGGCUcgCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 109781 | 0.66 | 0.830963 |
Target: 5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3' miRNA: 3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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