miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 102 0.67 0.78832
Target:  5'- cCCCCGGGCcCCgccGCCCGcGC-CGGc -3'
miRNA:   3'- -GGGGUCUGuGGau-UGGGCuCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 297 0.68 0.69412
Target:  5'- gCCgCAGcCGCCgccgcagccgGGCCCGcuCGCGGGg -3'
miRNA:   3'- -GGgGUCuGUGGa---------UUGGGCucGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 419 0.7 0.611812
Target:  5'- gCCCCGcgagcaccaggggcGGCGCC-GGCgCGGGCGgCGGGg -3'
miRNA:   3'- -GGGGU--------------CUGUGGaUUGgGCUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 511 0.72 0.498154
Target:  5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3'
miRNA:   3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 1394 0.69 0.634699
Target:  5'- aCgCCGGGCGCCgcgGCCgCGgcGGCGgCGGGg -3'
miRNA:   3'- -GgGGUCUGUGGau-UGG-GC--UCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 1647 0.69 0.664521
Target:  5'- gCCCCAG-CGCCgcGCUCu-GCGCGGc -3'
miRNA:   3'- -GGGGUCuGUGGauUGGGcuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 2290 0.75 0.352885
Target:  5'- gCCgCCAG-CGCCUc-CCCGGGCaGCGGGu -3'
miRNA:   3'- -GG-GGUCuGUGGAuuGGGCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 2471 0.7 0.59494
Target:  5'- gCgCCGGGCGCCagGGCUCGGGgaagaGCGGGu -3'
miRNA:   3'- -GgGGUCUGUGGa-UUGGGCUCg----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 2542 0.74 0.409036
Target:  5'- gCCgCCAG-CGCCgcgGCgCUGGGCGCGGGc -3'
miRNA:   3'- -GG-GGUCuGUGGau-UG-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 2816 0.72 0.507556
Target:  5'- -gCCGGGCgGCCccAGCCCGAGCuCGGGc -3'
miRNA:   3'- ggGGUCUG-UGGa-UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 2973 0.72 0.464987
Target:  5'- gCCCGGGCugaggcuggggcucgGCCUGgcgGCCCG-GCGcCGGGg -3'
miRNA:   3'- gGGGUCUG---------------UGGAU---UGGGCuCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 3346 0.66 0.839008
Target:  5'- aCCaCCGaACGCacagcaggGGCCCGcgggGGCGCGGGc -3'
miRNA:   3'- -GG-GGUcUGUGga------UUGGGC----UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 3353 0.75 0.360565
Target:  5'- gCCCGGcGCGCCggccuucagGGCCgCGAGCGCGGc -3'
miRNA:   3'- gGGGUC-UGUGGa--------UUGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 3817 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 3864 0.69 0.654595
Target:  5'- uCgCCAGcgGCGCCgcccCCCGcgcggcGGCGCGGGg -3'
miRNA:   3'- -GgGGUC--UGUGGauu-GGGC------UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 4192 0.71 0.53619
Target:  5'- gCCguGGCcgGCCaUGGCCgCGAGCGCGGcGg -3'
miRNA:   3'- gGGguCUG--UGG-AUUGG-GCUCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 4508 0.69 0.664521
Target:  5'- gCCCCAGuCGCgc-GCCC--GCGCGGGc -3'
miRNA:   3'- -GGGGUCuGUGgauUGGGcuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 4545 0.66 0.838212
Target:  5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3'
miRNA:   3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 4736 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 4955 0.71 0.53619
Target:  5'- gCCCAGGCGCC---CCCGGcCGCGGc -3'
miRNA:   3'- gGGGUCUGUGGauuGGGCUcGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.