Results 41 - 60 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 5' | -58.5 | NC_005261.1 | + | 60161 | 0.77 | 0.276156 |
Target: 5'- -gCCAG-CGCCUGGgCCG-GCGCGGGg -3' miRNA: 3'- ggGGUCuGUGGAUUgGGCuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 79948 | 0.77 | 0.269884 |
Target: 5'- cCCCCGGcGCGCC-GGCCCcguGAGCGCGGc -3' miRNA: 3'- -GGGGUC-UGUGGaUUGGG---CUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 74064 | 0.78 | 0.229157 |
Target: 5'- gCCCGGAcCACCUGcACgCGAuGCGCGGGc -3' miRNA: 3'- gGGGUCU-GUGGAU-UGgGCU-CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 67157 | 0.79 | 0.198495 |
Target: 5'- gCCCGGACGCCccGCCCGccGCGCGGcGg -3' miRNA: 3'- gGGGUCUGUGGauUGGGCu-CGCGCC-C- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 27780 | 0.82 | 0.120836 |
Target: 5'- gCCCAGGCACCcaaacGCCCG-GUGCGGGa -3' miRNA: 3'- gGGGUCUGUGGau---UGGGCuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 106807 | 0.75 | 0.352885 |
Target: 5'- gCCgCCAG-CGCCUc-CCCGGGCaGCGGGu -3' miRNA: 3'- -GG-GGUCuGUGGAuuGGGCUCG-CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 107870 | 0.75 | 0.360565 |
Target: 5'- gCCCGGcGCGCCggccuucagGGCCgCGAGCGCGGc -3' miRNA: 3'- gGGGUC-UGUGGa--------UUGG-GCUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 60131 | 0.74 | 0.400679 |
Target: 5'- gCCgGGGCcgggGCCUGGgCCG-GCGCGGGg -3' miRNA: 3'- gGGgUCUG----UGGAUUgGGCuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 51736 | 0.74 | 0.395717 |
Target: 5'- gCCCCugccgcagacAGGCGCC-GGCCCGgccgcguccaucaacGGCGCGGGc -3' miRNA: 3'- -GGGG----------UCUGUGGaUUGGGC---------------UCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 125661 | 0.74 | 0.392431 |
Target: 5'- gCCCCucucGGCcCCgcguuGCCCG-GCGCGGGg -3' miRNA: 3'- -GGGGu---CUGuGGau---UGGGCuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 60062 | 0.74 | 0.392431 |
Target: 5'- gCCCCGGGCuCCUcagguGGCCCGccggcAGCgGCGGGc -3' miRNA: 3'- -GGGGUCUGuGGA-----UUGGGC-----UCG-CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 75208 | 0.74 | 0.392431 |
Target: 5'- gCCgCGGGCGCCggcGCCCGcgcgGGCGCGGc -3' miRNA: 3'- -GGgGUCUGUGGau-UGGGC----UCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 42487 | 0.74 | 0.389163 |
Target: 5'- cCCCCGGcggcggcggcgGCGCCgcugagcgcggcgGGCCCGAGCGCGa- -3' miRNA: 3'- -GGGGUC-----------UGUGGa------------UUGGGCUCGCGCcc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 128612 | 0.74 | 0.384295 |
Target: 5'- cCCCCAccccCGCCUGcccaccccggGCCCGAG-GCGGGg -3' miRNA: 3'- -GGGGUcu--GUGGAU----------UGGGCUCgCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 127163 | 0.74 | 0.384295 |
Target: 5'- uCCCUAGACgcgcuggcggcGCCUGggcggcGCCCGAGUGCcgccGGGg -3' miRNA: 3'- -GGGGUCUG-----------UGGAU------UGGGCUCGCG----CCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 104419 | 0.74 | 0.384295 |
Target: 5'- cCCCCGGcCGCCcaaagacaAGCCCGccgcccGCGCGGGg -3' miRNA: 3'- -GGGGUCuGUGGa-------UUGGGCu-----CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 121958 | 0.74 | 0.381875 |
Target: 5'- cCCCCGGGCgaGCCgaaGCCCGgccccggcggccccGGCGCGGa -3' miRNA: 3'- -GGGGUCUG--UGGau-UGGGC--------------UCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 89379 | 0.74 | 0.37627 |
Target: 5'- gCCCGGGCGCUgGGCCUGcuGCGCGGcGg -3' miRNA: 3'- gGGGUCUGUGGaUUGGGCu-CGCGCC-C- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 53681 | 0.74 | 0.37627 |
Target: 5'- gCUCCAGGCGCUgGGCCCGcGUGUGGa -3' miRNA: 3'- -GGGGUCUGUGGaUUGGGCuCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 10645 | 0.74 | 0.36836 |
Target: 5'- gCCCCgaAGACGCCcagggcGCCCuGGUGCGGGc -3' miRNA: 3'- -GGGG--UCUGUGGau----UGGGcUCGCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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