miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 96935 0.66 0.839008
Target:  5'- aCCCgAGACGCCca---CGGGCgcaucgGCGGGg -3'
miRNA:   3'- -GGGgUCUGUGGauuggGCUCG------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 58777 0.66 0.822748
Target:  5'- cCCCCAGcGCGCC-GGCCagCGcGCGCaGGa -3'
miRNA:   3'- -GGGGUC-UGUGGaUUGG--GCuCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 25456 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109652 1.11 0.001365
Target:  5'- gCCCCAGACACCUAACCCGAGCGCGGGu -3'
miRNA:   3'- -GGGGUCUGUGGAUUGGGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 137675 0.66 0.839008
Target:  5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3'
miRNA:   3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 28225 0.66 0.839008
Target:  5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3'
miRNA:   3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 4736 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 30288 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 31450 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 73824 0.66 0.830963
Target:  5'- gCCC--GCGCCUAGCCCG-GCucuUGGGc -3'
miRNA:   3'- gGGGucUGUGGAUUGGGCuCGc--GCCC- -5'
23586 5' -58.5 NC_005261.1 + 127695 0.66 0.834202
Target:  5'- gCCCCGGcgGCGCCggagGagcugcgcguggccuGCCUGGuaGCGGGa -3'
miRNA:   3'- -GGGGUC--UGUGGa---U---------------UGGGCUcgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127888 0.66 0.839008
Target:  5'- gCgCCGG-CGCCcgucgGGCCCGGGCcUGGGc -3'
miRNA:   3'- -GgGGUCuGUGGa----UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 5264 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 84845 0.66 0.839008
Target:  5'- gCCCAG-CACC--ACCgCGGGcCGCGuGGc -3'
miRNA:   3'- gGGGUCuGUGGauUGG-GCUC-GCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 4545 0.66 0.838212
Target:  5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3'
miRNA:   3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107598 0.66 0.83015
Target:  5'- gUCCCgcaggacggcagcGGGCACagcgUCCGuGCGCGGGa -3'
miRNA:   3'- -GGGG-------------UCUGUGgauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 46278 0.66 0.822748
Target:  5'- cCCCgGGGCGCuCUGGCCgGgcaacGGCGCGc- -3'
miRNA:   3'- -GGGgUCUGUG-GAUUGGgC-----UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 72846 0.66 0.839008
Target:  5'- gCCaGGGCGCCagcGCCCaGGCGUGGa -3'
miRNA:   3'- gGGgUCUGUGGau-UGGGcUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 94990 0.66 0.839008
Target:  5'- gCCCCGcgcGCGCCccGCCCugcGGgGCGGGc -3'
miRNA:   3'- -GGGGUc--UGUGGauUGGGc--UCgCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.