miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 96935 0.66 0.839008
Target:  5'- aCCCgAGACGCCca---CGGGCgcaucgGCGGGg -3'
miRNA:   3'- -GGGgUCUGUGGauuggGCUCG------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 103051 0.66 0.814368
Target:  5'- gCCCAG-CGCCUGuCCCG-GCaCGGc -3'
miRNA:   3'- gGGGUCuGUGGAUuGGGCuCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 106807 0.66 0.814368
Target:  5'- -aCCAG-CGCCgagUGGCCCGccagcAGCGCGuGGu -3'
miRNA:   3'- ggGGUCuGUGG---AUUGGGC-----UCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 82734 0.66 0.822748
Target:  5'- gUCCAGccGCGCC-AGCCCGucugcgaucGCGCGGu -3'
miRNA:   3'- gGGGUC--UGUGGaUUGGGCu--------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 116006 0.66 0.830963
Target:  5'- gCCCgAGGCgGCCUGAgCCGccgacGGCGCGc- -3'
miRNA:   3'- -GGGgUCUG-UGGAUUgGGC-----UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 124953 0.66 0.805832
Target:  5'- -gCCGG-CGCCcuggAGCCCGcacucaaaucGCGCGGGg -3'
miRNA:   3'- ggGGUCuGUGGa---UUGGGCu---------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 132309 0.66 0.814368
Target:  5'- gCCUUAGGCGCCccauCCCc--CGCGGGg -3'
miRNA:   3'- -GGGGUCUGUGGauu-GGGcucGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 4736 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15819 0.66 0.822748
Target:  5'- aCCCagaagagcaaCAGGCACCgcAUCgCGAGCGCGc- -3'
miRNA:   3'- -GGG----------GUCUGUGGauUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 29886 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 94990 0.66 0.839008
Target:  5'- gCCCCGcgcGCGCCccGCCCugcGGgGCGGGc -3'
miRNA:   3'- -GGGGUc--UGUGGauUGGGc--UCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 96352 0.66 0.805832
Target:  5'- -aCCuGACGCCcugacUGGCCUG-GCGCGGc -3'
miRNA:   3'- ggGGuCUGUGG-----AUUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 127014 0.66 0.805832
Target:  5'- gCCgCAGGCGgC-GGCCCGAGCa-GGGa -3'
miRNA:   3'- -GGgGUCUGUgGaUUGGGCUCGcgCCC- -5'
23586 5' -58.5 NC_005261.1 + 79030 0.66 0.820251
Target:  5'- gCCCgGGGCGCCcgcGCCCuuggcgucguccuuGAGCGCGc- -3'
miRNA:   3'- -GGGgUCUGUGGau-UGGG--------------CUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 107598 0.66 0.83015
Target:  5'- gUCCCgcaggacggcagcGGGCACagcgUCCGuGCGCGGGa -3'
miRNA:   3'- -GGGG-------------UCUGUGgauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 73824 0.66 0.830963
Target:  5'- gCCC--GCGCCUAGCCCG-GCucuUGGGc -3'
miRNA:   3'- gGGGucUGUGGAUUGGGCuCGc--GCCC- -5'
23586 5' -58.5 NC_005261.1 + 137675 0.66 0.839008
Target:  5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3'
miRNA:   3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 68543 0.66 0.822748
Target:  5'- gCCCGcGCGCCc--CCUGcuGCGCGGGc -3'
miRNA:   3'- gGGGUcUGUGGauuGGGCu-CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 5105 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.