miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 72468 0.66 0.92694
Target:  5'- cGCGGCGaGCGcGaGCGcgGCcagCGCCAGg -3'
miRNA:   3'- -CGCCGCaCGUaCaUGUa-CGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 43373 0.67 0.896766
Target:  5'- uGCGGCG-GCAUcggccucgcgGUGCcgGCaccguccaggCGCCGGg -3'
miRNA:   3'- -CGCCGCaCGUA----------CAUGuaCGa---------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 88455 0.67 0.8961
Target:  5'- cGCGccGCGUgaGCGUGUGggcgggcCGUGCcgCGCCGGa -3'
miRNA:   3'- -CGC--CGCA--CGUACAU-------GUACGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 107211 1.11 0.002126
Target:  5'- gGCGGCGUGCAUGUACAUGCUCGCCAGg -3'
miRNA:   3'- -CGCCGCACGUACAUGUACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 12770 0.66 0.921398
Target:  5'- gGCGGCGgugGCggGgg---GCUCGUCGGc -3'
miRNA:   3'- -CGCCGCa--CGuaCauguaCGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 23830 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 93773 0.66 0.915608
Target:  5'- cGCGGCGUcGCAgcagGUGCccccgGgaCGCCGc -3'
miRNA:   3'- -CGCCGCA-CGUa---CAUGua---CgaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 14961 0.66 0.915608
Target:  5'- aGCgGGCGUGCcUGggGCGacUGCgcggccgCGCCGGc -3'
miRNA:   3'- -CG-CCGCACGuACa-UGU--ACGa------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 73922 0.66 0.909571
Target:  5'- gGCGGCccgacUGCGUGUGCcUGCUCcgGCUu- -3'
miRNA:   3'- -CGCCGc----ACGUACAUGuACGAG--CGGuc -5'
23588 5' -54.9 NC_005261.1 + 59794 0.67 0.896766
Target:  5'- gGCGGCGggcgGCAg--GCcgGCguggCGCCGc -3'
miRNA:   3'- -CGCCGCa---CGUacaUGuaCGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 33747 0.66 0.90329
Target:  5'- cGCGGCGccgggGCcgG-GCccGCUCGCgGGg -3'
miRNA:   3'- -CGCCGCa----CGuaCaUGuaCGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 104223 0.66 0.909571
Target:  5'- cGCGGCGcGCAc---CGUGCccuccagCGCCAGa -3'
miRNA:   3'- -CGCCGCaCGUacauGUACGa------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 45623 0.66 0.92694
Target:  5'- cGCGGCGcgGCGcg-GCggGCccgCGCCGGa -3'
miRNA:   3'- -CGCCGCa-CGUacaUGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 91711 0.66 0.90329
Target:  5'- cCGGC-UGCAag-GCcgGCUCGCCGc -3'
miRNA:   3'- cGCCGcACGUacaUGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 46451 0.66 0.92694
Target:  5'- aCGGCGUGCGUGaACAggccCUCGaagcgCAGg -3'
miRNA:   3'- cGCCGCACGUACaUGUac--GAGCg----GUC- -5'
23588 5' -54.9 NC_005261.1 + 74159 0.66 0.913823
Target:  5'- aGCGG-G-GCAUGcGCGUGCUCaaggugacgcgccuGCCGGc -3'
miRNA:   3'- -CGCCgCaCGUACaUGUACGAG--------------CGGUC- -5'
23588 5' -54.9 NC_005261.1 + 105249 0.67 0.896766
Target:  5'- uGCGGCG-GCAUccgcgcgACAgGCUCGgCGGg -3'
miRNA:   3'- -CGCCGCaCGUAca-----UGUaCGAGCgGUC- -5'
23588 5' -54.9 NC_005261.1 + 15065 0.67 0.896766
Target:  5'- cGCGGCGggGUcgGggguCAgGCUCGCCc- -3'
miRNA:   3'- -CGCCGCa-CGuaCau--GUaCGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 101997 0.66 0.921398
Target:  5'- aCGGCGUcGUAgugGcGCA-GCUCGCCGc -3'
miRNA:   3'- cGCCGCA-CGUa--CaUGUaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 23773 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.