miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 5' -62.8 NC_005261.1 + 133857 0.66 0.560143
Target:  5'- -cGGCGCgcgcgacugCCGCGCCUaccuGUGGUcugcgcaaGCCCGCg -3'
miRNA:   3'- uuCUGCG---------GGUGCGGG----UACCG--------CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 3838 0.66 0.560143
Target:  5'- cGGGCGCUgGCGgCagcGGCGCCgGCg -3'
miRNA:   3'- uUCUGCGGgUGCgGguaCCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 33749 0.66 0.560143
Target:  5'- -cGGCGCCggggcCGgGCCCGcucgcGGgGCCCGCg -3'
miRNA:   3'- uuCUGCGG-----GUgCGGGUa----CCgCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 78336 0.66 0.560143
Target:  5'- -cGACGCgCCaACGCgguacCUcgGGCGCCaCGCg -3'
miRNA:   3'- uuCUGCG-GG-UGCG-----GGuaCCGCGG-GUG- -5'
23589 5' -62.8 NC_005261.1 + 78833 0.66 0.560143
Target:  5'- cGGGA-GCUgcggUACGCCgGcGGCGCCCGCc -3'
miRNA:   3'- -UUCUgCGG----GUGCGGgUaCCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 87584 0.66 0.560143
Target:  5'- -cGcCGCCCAgGCCgGuggucuUGGUGCCgGCg -3'
miRNA:   3'- uuCuGCGGGUgCGGgU------ACCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 91899 0.66 0.560143
Target:  5'- ---cUGCCCcCGCCCccgucccGGCGCaCCACg -3'
miRNA:   3'- uucuGCGGGuGCGGGua-----CCGCG-GGUG- -5'
23589 5' -62.8 NC_005261.1 + 111444 0.66 0.560143
Target:  5'- cGGACGaCCgGCGagCCG-GGCGCCgGCg -3'
miRNA:   3'- uUCUGC-GGgUGCg-GGUaCCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 131184 0.66 0.560143
Target:  5'- --aGCGgCUACGCCCGcGGCGCggucgCCGCc -3'
miRNA:   3'- uucUGCgGGUGCGGGUaCCGCG-----GGUG- -5'
23589 5' -62.8 NC_005261.1 + 78065 0.66 0.560143
Target:  5'- -cGGCcCCCGCGCCgGcccaggcgcUGGCcCCCGCg -3'
miRNA:   3'- uuCUGcGGGUGCGGgU---------ACCGcGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 120659 0.66 0.560143
Target:  5'- cAAGGCGCgggCGCGCCUGUGaucucgcgcGCGCCCcgGCg -3'
miRNA:   3'- -UUCUGCGg--GUGCGGGUAC---------CGCGGG--UG- -5'
23589 5' -62.8 NC_005261.1 + 118902 0.66 0.559161
Target:  5'- uGGugGCCUgcgucuggguccgGCGCCgCGggcgcGGCGCCgCGCg -3'
miRNA:   3'- uUCugCGGG-------------UGCGG-GUa----CCGCGG-GUG- -5'
23589 5' -62.8 NC_005261.1 + 53287 0.66 0.554255
Target:  5'- gGAGGCGCCaaGCGCCCccGuGCGCgggucgaucaggaggCCGCa -3'
miRNA:   3'- -UUCUGCGGg-UGCGGGuaC-CGCG---------------GGUG- -5'
23589 5' -62.8 NC_005261.1 + 59683 0.66 0.550338
Target:  5'- gAAGcCGCCCucggccagcacGCGCUCcgGGCagacccGCCCGCc -3'
miRNA:   3'- -UUCuGCGGG-----------UGCGGGuaCCG------CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 77977 0.66 0.550338
Target:  5'- ---cUGCCCccaGCGCCCGUGccGUGCCUGCc -3'
miRNA:   3'- uucuGCGGG---UGCGGGUAC--CGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 98436 0.66 0.550338
Target:  5'- --uGCGgaCCCGgGCCgGUaggcGGCGCCCGCa -3'
miRNA:   3'- uucUGC--GGGUgCGGgUA----CCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 102888 0.66 0.550338
Target:  5'- cGGGCGggagcCCCGCGCCCcUG--GCCCGCa -3'
miRNA:   3'- uUCUGC-----GGGUGCGGGuACcgCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 105960 0.66 0.550338
Target:  5'- -cGAUgGCCUcgGCGCCCAgcgcGGCGUCgACg -3'
miRNA:   3'- uuCUG-CGGG--UGCGGGUa---CCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 118075 0.66 0.550338
Target:  5'- cGGcCGCagCCGCGCUCGucugcUGGCGgCCCGCc -3'
miRNA:   3'- uUCuGCG--GGUGCGGGU-----ACCGC-GGGUG- -5'
23589 5' -62.8 NC_005261.1 + 48633 0.66 0.550338
Target:  5'- --cACGCCC-CGCCCcu-GCGCCgGCc -3'
miRNA:   3'- uucUGCGGGuGCGGGuacCGCGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.