miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 5' -59.7 NC_005261.1 + 119052 0.67 0.682172
Target:  5'- aCGC----GCCCGcgGCCGCGCGuGUGCu -3'
miRNA:   3'- -GCGacuaCGGGCa-CGGCGCGUcCAUG- -5'
23592 5' -59.7 NC_005261.1 + 68768 0.67 0.68117
Target:  5'- cCGCgGA-GCCgcCGUGUcgaacuuCGUGCAGGUGCg -3'
miRNA:   3'- -GCGaCUaCGG--GCACG-------GCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 105845 0.67 0.680168
Target:  5'- cCGCUGuccgcguccGCCCGgucggcgaugcgGuuGgGCAGGUGCa -3'
miRNA:   3'- -GCGACua-------CGGGCa-----------CggCgCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 127315 0.67 0.672137
Target:  5'- gCGgUGggGCCC-UGCCGCccGCGGGgGCc -3'
miRNA:   3'- -GCgACuaCGGGcACGGCG--CGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 42561 0.67 0.672137
Target:  5'- uGCUcuUGCCCGaGcCCGCGUuccccgugauaAGGUACg -3'
miRNA:   3'- gCGAcuACGGGCaC-GGCGCG-----------UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 68535 0.67 0.672137
Target:  5'- cCGCcGgcGCCCGcgcgcccccUGCUGCGCGGGc-- -3'
miRNA:   3'- -GCGaCuaCGGGC---------ACGGCGCGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 68982 0.67 0.672137
Target:  5'- cCGCg---GCCCuuuucggGCCGCGCGGGcGCc -3'
miRNA:   3'- -GCGacuaCGGGca-----CGGCGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 72962 0.67 0.672137
Target:  5'- gGCUcgcGCCCGccGCCGCGgGGGUccGCg -3'
miRNA:   3'- gCGAcuaCGGGCa-CGGCGCgUCCA--UG- -5'
23592 5' -59.7 NC_005261.1 + 58711 0.67 0.672137
Target:  5'- cCGCUGAgaggUGCgccaCCGccGCCGCGCAGaGcGCg -3'
miRNA:   3'- -GCGACU----ACG----GGCa-CGGCGCGUC-CaUG- -5'
23592 5' -59.7 NC_005261.1 + 97152 0.67 0.671132
Target:  5'- gCGCUGGcgccgGCCCG-GCCGgcuggguCGCGGGcGCc -3'
miRNA:   3'- -GCGACUa----CGGGCaCGGC-------GCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 42354 0.67 0.66207
Target:  5'- uGCUGGgcgGgCUG-GCCGCGCAaacguacuGGUGCc -3'
miRNA:   3'- gCGACUa--CgGGCaCGGCGCGU--------CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 38282 0.67 0.65097
Target:  5'- gGCUGGUGCacgCgGUGCuggcccgccugagCGCGCAGGgcgGCc -3'
miRNA:   3'- gCGACUACG---GgCACG-------------GCGCGUCCa--UG- -5'
23592 5' -59.7 NC_005261.1 + 51355 0.67 0.641874
Target:  5'- cCGCUGGgcUGUCCGgcgcgGaguaCGCGCAGGccgUGCg -3'
miRNA:   3'- -GCGACU--ACGGGCa----Cg---GCGCGUCC---AUG- -5'
23592 5' -59.7 NC_005261.1 + 71868 0.67 0.641874
Target:  5'- cCGCuUGcgGUCCGc-CCGCGCGGGcACg -3'
miRNA:   3'- -GCG-ACuaCGGGCacGGCGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 50845 0.67 0.641874
Target:  5'- aGCUGgcGCCUGUgGCuCGCcCAGGUcgGCg -3'
miRNA:   3'- gCGACuaCGGGCA-CG-GCGcGUCCA--UG- -5'
23592 5' -59.7 NC_005261.1 + 29843 0.67 0.641874
Target:  5'- aGCUGcgcgccGUGCUCGccgGCCGCGCGGcGccgGCg -3'
miRNA:   3'- gCGAC------UACGGGCa--CGGCGCGUC-Ca--UG- -5'
23592 5' -59.7 NC_005261.1 + 3615 0.67 0.63176
Target:  5'- aGCUcaGcUGCCCGgaGCaCGCGCuccGGGUGCg -3'
miRNA:   3'- gCGA--CuACGGGCa-CG-GCGCG---UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 83181 0.67 0.63176
Target:  5'- aGCUcGGUGCgcacCCGcagcUGCCGCgugacguggucGCAGGUGCa -3'
miRNA:   3'- gCGA-CUACG----GGC----ACGGCG-----------CGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 112689 0.67 0.63176
Target:  5'- gGCUGGgcgucgaGgCCGUGcCCGUGCAGG-ACc -3'
miRNA:   3'- gCGACUa------CgGGCAC-GGCGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 134335 0.67 0.63176
Target:  5'- uCGCUGcUGuaccgcaagccCCCGcgccGCCGCGCGGGggGCg -3'
miRNA:   3'- -GCGACuAC-----------GGGCa---CGGCGCGUCCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.