miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 3' -58.9 NC_005261.1 + 95431 1.1 0.001192
Target:  5'- cCACGCUGGCCUCGACGCAGAGCACGGg -3'
miRNA:   3'- -GUGCGACCGGAGCUGCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 130599 0.66 0.800245
Target:  5'- cCGCGcCUGGCCcgucuuugccugCGccuucaacagcGCGCGGGGCGCGc -3'
miRNA:   3'- -GUGC-GACCGGa-----------GC-----------UGCGUCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 135010 0.66 0.793167
Target:  5'- gGCGCggcgGGCC-CGcACGCGGc-CGCGGc -3'
miRNA:   3'- gUGCGa---CCGGaGC-UGCGUCucGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 118983 0.66 0.793167
Target:  5'- cCGCGCUGuGCUUCuGCGuCGGGGCcuGCuGGg -3'
miRNA:   3'- -GUGCGAC-CGGAGcUGC-GUCUCG--UG-CC- -5'
23594 3' -58.9 NC_005261.1 + 82160 0.66 0.793167
Target:  5'- cCGCGCcaGCaagcgCGGCGCGGAagGCGCGGc -3'
miRNA:   3'- -GUGCGacCGga---GCUGCGUCU--CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 44310 0.66 0.793167
Target:  5'- -cCGCUGcccgcgggcGCCgcaGACGgGGGGCugGGg -3'
miRNA:   3'- guGCGAC---------CGGag-CUGCgUCUCGugCC- -5'
23594 3' -58.9 NC_005261.1 + 13941 0.66 0.793167
Target:  5'- uCGCGUUgcGGCCcagCcGCGCGGAaacGCGCGGu -3'
miRNA:   3'- -GUGCGA--CCGGa--GcUGCGUCU---CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 138029 0.66 0.793167
Target:  5'- gGCGC-GGCCcggCGGCGguG-GCgGCGGu -3'
miRNA:   3'- gUGCGaCCGGa--GCUGCguCuCG-UGCC- -5'
23594 3' -58.9 NC_005261.1 + 126076 0.66 0.793167
Target:  5'- -cCGCcGGCCUCGGCG---GGCGCGc -3'
miRNA:   3'- guGCGaCCGGAGCUGCgucUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 1776 0.66 0.802001
Target:  5'- gCACGUUGGCgC-CG-CgGCAGAGCcgcaGCGGc -3'
miRNA:   3'- -GUGCGACCG-GaGCuG-CGUCUCG----UGCC- -5'
23594 3' -58.9 NC_005261.1 + 51773 0.66 0.802001
Target:  5'- gGCGCUGGCCggCGuCGCccuGCugGc -3'
miRNA:   3'- gUGCGACCGGa-GCuGCGucuCGugCc -5'
23594 3' -58.9 NC_005261.1 + 118943 0.66 0.802001
Target:  5'- gCGCgGCUGGCCgCGGCGCAcguGGCcaaGGu -3'
miRNA:   3'- -GUG-CGACCGGaGCUGCGUc--UCGug-CC- -5'
23594 3' -58.9 NC_005261.1 + 90731 0.66 0.802001
Target:  5'- -cCGCUgGGCCgcgccugaGGCGCuG-GCGCGGg -3'
miRNA:   3'- guGCGA-CCGGag------CUGCGuCuCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 59381 0.66 0.802001
Target:  5'- aGCGCccGcGCCaCGGCGCcGAGCcCGGg -3'
miRNA:   3'- gUGCGa-C-CGGaGCUGCGuCUCGuGCC- -5'
23594 3' -58.9 NC_005261.1 + 33750 0.66 0.802001
Target:  5'- gGCGCcggGGCCgggccCGcuCGCGGGGCccGCGGc -3'
miRNA:   3'- gUGCGa--CCGGa----GCu-GCGUCUCG--UGCC- -5'
23594 3' -58.9 NC_005261.1 + 90111 0.66 0.802001
Target:  5'- --gGCUGGgC-CGACGCGGccCGCGGc -3'
miRNA:   3'- gugCGACCgGaGCUGCGUCucGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 71177 0.66 0.802001
Target:  5'- aACGCguccgGGCgCagcuCGCGGGGCGCGGc -3'
miRNA:   3'- gUGCGa----CCG-GagcuGCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 65533 0.66 0.802001
Target:  5'- aGCGC-GGCCgcgCGG-GCAGcAGCGCGu -3'
miRNA:   3'- gUGCGaCCGGa--GCUgCGUC-UCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 28562 0.66 0.802001
Target:  5'- gACGCggcccgccgGGCCgaGGCGCGcGAGCGcCGGc -3'
miRNA:   3'- gUGCGa--------CCGGagCUGCGU-CUCGU-GCC- -5'
23594 3' -58.9 NC_005261.1 + 12946 0.66 0.802001
Target:  5'- uGCGCUucuGGCC-CG-CGCGGcGCGCGc -3'
miRNA:   3'- gUGCGA---CCGGaGCuGCGUCuCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.