miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 3' -58.9 NC_005261.1 + 358 0.66 0.793167
Target:  5'- gGCGC-GGCCcggCGGCGguG-GCgGCGGu -3'
miRNA:   3'- gUGCGaCCGGa--GCUGCguCuCG-UGCC- -5'
23594 3' -58.9 NC_005261.1 + 454 0.66 0.765857
Target:  5'- gACGggGGCCgCGACggccgGCGGgauGGCGCGGg -3'
miRNA:   3'- gUGCgaCCGGaGCUG-----CGUC---UCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 974 0.67 0.726912
Target:  5'- aGCgGCgGGCCgCG-CGCAGAGCggaggagACGGg -3'
miRNA:   3'- gUG-CGaCCGGaGCuGCGUCUCG-------UGCC- -5'
23594 3' -58.9 NC_005261.1 + 1168 0.69 0.612478
Target:  5'- gCGCGCcGGCCcgCGcCGCGGccggggccggggccgGGCGCGGc -3'
miRNA:   3'- -GUGCGaCCGGa-GCuGCGUC---------------UCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 1448 0.66 0.784192
Target:  5'- aGCgGCgGcGCCUCGGCGUgcggcuccAGcAGCGCGGc -3'
miRNA:   3'- gUG-CGaC-CGGAGCUGCG--------UC-UCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 1703 0.72 0.418946
Target:  5'- aCGCGCUgccGGUaCUCG-CGCGGcGGCACGGg -3'
miRNA:   3'- -GUGCGA---CCG-GAGCuGCGUC-UCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 1776 0.66 0.802001
Target:  5'- gCACGUUGGCgC-CG-CgGCAGAGCcgcaGCGGc -3'
miRNA:   3'- -GUGCGACCG-GaGCuG-CGUCUCG----UGCC- -5'
23594 3' -58.9 NC_005261.1 + 1825 0.73 0.410381
Target:  5'- cCGCGCguaagcGGCCUCGGCGCGcgcgaaGGCGcCGGg -3'
miRNA:   3'- -GUGCGa-----CCGGAGCUGCGUc-----UCGU-GCC- -5'
23594 3' -58.9 NC_005261.1 + 2390 0.7 0.538065
Target:  5'- gCGCGCUGGCggCGAgcgcgccCGCGGGccccGCGCGGc -3'
miRNA:   3'- -GUGCGACCGgaGCU-------GCGUCU----CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 2534 0.69 0.608464
Target:  5'- gGCaGUaGGCCgccagcgccgCGGCGCuGGGCGCGGg -3'
miRNA:   3'- gUG-CGaCCGGa---------GCUGCGuCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 2997 0.69 0.598442
Target:  5'- cCugGC-GGCC-CGGCGCcGGGGCucccGCGGg -3'
miRNA:   3'- -GugCGaCCGGaGCUGCG-UCUCG----UGCC- -5'
23594 3' -58.9 NC_005261.1 + 3358 0.71 0.47251
Target:  5'- gCGCGCcGGCCUUcagGGcCGC-GAGCGCGGc -3'
miRNA:   3'- -GUGCGaCCGGAG---CU-GCGuCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 3427 0.68 0.67868
Target:  5'- gCGCGCgGGCCagCGuccAgGCGGGcGCGCGGg -3'
miRNA:   3'- -GUGCGaCCGGa-GC---UgCGUCU-CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 3528 0.76 0.257421
Target:  5'- aGCGCggcggccGCCUCGGCGCGcAGCGCGGc -3'
miRNA:   3'- gUGCGac-----CGGAGCUGCGUcUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 3665 0.68 0.688628
Target:  5'- aGCGCaGGCCgCGGCcgGCAGGcCGCGGc -3'
miRNA:   3'- gUGCGaCCGGaGCUG--CGUCUcGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 3865 0.71 0.510071
Target:  5'- cCGCGC-GGCCggcgagcaCGGCGCGcagcucggcGAGCGCGGc -3'
miRNA:   3'- -GUGCGaCCGGa-------GCUGCGU---------CUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 3926 0.66 0.793167
Target:  5'- gGCGCcGGCCUCcGgGUAGGcCAUGGg -3'
miRNA:   3'- gUGCGaCCGGAGcUgCGUCUcGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 4413 0.7 0.547842
Target:  5'- gCGCGCUgccgggccaGGCCUCGcCGgAGGGCgucagcaGCGGg -3'
miRNA:   3'- -GUGCGA---------CCGGAGCuGCgUCUCG-------UGCC- -5'
23594 3' -58.9 NC_005261.1 + 4478 0.72 0.427618
Target:  5'- uCGCGCgGcGCCgCGGCGUAGccuGCGCGGg -3'
miRNA:   3'- -GUGCGaC-CGGaGCUGCGUCu--CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 4523 0.66 0.765857
Target:  5'- cCGCGCgGGCgCcgCGGCG-AGGGCGcCGGg -3'
miRNA:   3'- -GUGCGaCCG-Ga-GCUGCgUCUCGU-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.