miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 3' -58.9 NC_005261.1 + 95431 1.1 0.001192
Target:  5'- cCACGCUGGCCUCGACGCAGAGCACGGg -3'
miRNA:   3'- -GUGCGACCGGAGCUGCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 71947 0.87 0.05047
Target:  5'- gCGCGCcccacUGGCgUCGGCGCGGGGCGCGGa -3'
miRNA:   3'- -GUGCG-----ACCGgAGCUGCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 94846 0.83 0.097457
Target:  5'- gCGCGcCUGGCCUCGGCGCucgcGCACGGc -3'
miRNA:   3'- -GUGC-GACCGGAGCUGCGucu-CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 96983 0.82 0.116754
Target:  5'- uCACGC-GGCCUCGGCGCGGcuaAGCGCGc -3'
miRNA:   3'- -GUGCGaCCGGAGCUGCGUC---UCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 105951 0.81 0.129327
Target:  5'- gCGCGCcgucgaUGGCCUCGGCGCccAGCGCGGc -3'
miRNA:   3'- -GUGCG------ACCGGAGCUGCGucUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 94271 0.8 0.136074
Target:  5'- gGCGCcgcgaGGCuCUUGGCGCAGAGCAUGGc -3'
miRNA:   3'- gUGCGa----CCG-GAGCUGCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 73777 0.79 0.170593
Target:  5'- gGCGCUGGCCUgCGACGUgc-GCGCGGc -3'
miRNA:   3'- gUGCGACCGGA-GCUGCGucuCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 17485 0.78 0.192995
Target:  5'- gCGCGCcggggGGuCCUaGACGCGGAGCAUGGg -3'
miRNA:   3'- -GUGCGa----CC-GGAgCUGCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 73467 0.77 0.212734
Target:  5'- cCGCGCgcccccccugGGCCgCGGCGCGGcGCGCGGa -3'
miRNA:   3'- -GUGCGa---------CCGGaGCUGCGUCuCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 30243 0.77 0.22324
Target:  5'- -cCGCUGGCgcgguaCUCGACGCGcGGCGCGGc -3'
miRNA:   3'- guGCGACCG------GAGCUGCGUcUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 36946 0.76 0.243837
Target:  5'- uGCGCUGGCgcaaggcccgccgcgCGGCGCAGAGCuCGGu -3'
miRNA:   3'- gUGCGACCGga-------------GCUGCGUCUCGuGCC- -5'
23594 3' -58.9 NC_005261.1 + 108894 0.76 0.25144
Target:  5'- cCGCGCUGcccGCCggCGA-GCGGGGCGCGGg -3'
miRNA:   3'- -GUGCGAC---CGGa-GCUgCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 31282 0.76 0.25144
Target:  5'- gGCGCUGGCCgagaUCGcggcccgccgccGCGCGGGGCccGCGGg -3'
miRNA:   3'- gUGCGACCGG----AGC------------UGCGUCUCG--UGCC- -5'
23594 3' -58.9 NC_005261.1 + 135192 0.76 0.257421
Target:  5'- uCGCGCggagcaUGGCCgaggCGGCGCAGAGggcCACGGc -3'
miRNA:   3'- -GUGCG------ACCGGa---GCUGCGUCUC---GUGCC- -5'
23594 3' -58.9 NC_005261.1 + 3528 0.76 0.257421
Target:  5'- aGCGCggcggccGCCUCGGCGCGcAGCGCGGc -3'
miRNA:   3'- gUGCGac-----CGGAGCUGCGUcUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 135761 0.76 0.263518
Target:  5'- gCGCGgUGcGCUcCGGCGCAGAGCGCGu -3'
miRNA:   3'- -GUGCgAC-CGGaGCUGCGUCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 29515 0.76 0.263518
Target:  5'- gACGCcaUGGCCUgGcUGCAGAGCGCGa -3'
miRNA:   3'- gUGCG--ACCGGAgCuGCGUCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 31811 0.76 0.263518
Target:  5'- gCGCGCUGGCCUgagCGGCGCGcgcuGGCGCGc -3'
miRNA:   3'- -GUGCGACCGGA---GCUGCGUc---UCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 84550 0.76 0.263518
Target:  5'- aCACGCgGGCC-CaGCGCcuGGAGCACGGc -3'
miRNA:   3'- -GUGCGaCCGGaGcUGCG--UCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 74908 0.75 0.282512
Target:  5'- cCGCGCUGGCCgcgCGGgGgAGGGCgaggACGGg -3'
miRNA:   3'- -GUGCGACCGGa--GCUgCgUCUCG----UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.