miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 5' -55.5 NC_005261.1 + 118548 0.73 0.556781
Target:  5'- uGCGGCGcgCgcgaggacgccGUGCCCGcGCGCGcGGCg -3'
miRNA:   3'- -CGCUGCuaGaa---------CAUGGGC-CGCGU-CCG- -5'
23598 5' -55.5 NC_005261.1 + 49127 0.73 0.558789
Target:  5'- cGCGGCGggCggGaccCCCGcGCGCAGGUa -3'
miRNA:   3'- -CGCUGCuaGaaCau-GGGC-CGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 23478 0.73 0.568859
Target:  5'- gGCGGCGAgugCgcggGCCCgccugggcaGGCGCGGGCc -3'
miRNA:   3'- -CGCUGCUa--GaacaUGGG---------CCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 28762 0.73 0.589124
Target:  5'- cGCGGcCGGgggCgccUGgGCCgCGGCGCGGGCg -3'
miRNA:   3'- -CGCU-GCUa--Ga--ACaUGG-GCCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 68283 0.73 0.589124
Target:  5'- cGCGGCGg----GgcCCCGGcCGCGGGCg -3'
miRNA:   3'- -CGCUGCuagaaCauGGGCC-GCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 98270 0.72 0.596249
Target:  5'- gGCGGCGcgCgcGUucgacGCCCGGCGCguccgcggccucggGGGCg -3'
miRNA:   3'- -CGCUGCuaGaaCA-----UGGGCCGCG--------------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 10530 0.72 0.608492
Target:  5'- cGCGGCGcgCUcgcUGUcgccCCCGGCGCgccugccGGGCc -3'
miRNA:   3'- -CGCUGCuaGA---ACAu---GGGCCGCG-------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 44702 0.72 0.609514
Target:  5'- cGCGGCGAUCUUcacgGCUgaCGcGCGCAGGg -3'
miRNA:   3'- -CGCUGCUAGAAca--UGG--GC-CGCGUCCg -5'
23598 5' -55.5 NC_005261.1 + 75810 0.72 0.619738
Target:  5'- uCGGCacgCUgGUGCCCGGCGC-GGCc -3'
miRNA:   3'- cGCUGcuaGAaCAUGGGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 98229 0.72 0.625877
Target:  5'- cGCGGCGGgcaUCgauuuccgcgGCCCGGUGCGGcGCg -3'
miRNA:   3'- -CGCUGCU---AGaaca------UGGGCCGCGUC-CG- -5'
23598 5' -55.5 NC_005261.1 + 32213 0.72 0.629971
Target:  5'- cCGACGAgCUgccgGCCgCGGCGguGGCc -3'
miRNA:   3'- cGCUGCUaGAaca-UGG-GCCGCguCCG- -5'
23598 5' -55.5 NC_005261.1 + 122632 0.72 0.640207
Target:  5'- aCGGCGAgcgCgag-GCCCGGCGCgcguacguGGGCg -3'
miRNA:   3'- cGCUGCUa--GaacaUGGGCCGCG--------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 72430 0.72 0.640207
Target:  5'- uCGcCGcgCUUGccCCCGGCGgGGGCg -3'
miRNA:   3'- cGCuGCuaGAACauGGGCCGCgUCCG- -5'
23598 5' -55.5 NC_005261.1 + 94240 0.72 0.646345
Target:  5'- gGCGGCGAccacgaugGCCaCGGCGCAGGg -3'
miRNA:   3'- -CGCUGCUagaaca--UGG-GCCGCGUCCg -5'
23598 5' -55.5 NC_005261.1 + 11949 0.72 0.650435
Target:  5'- cGCGGCGG-CUc--GCCCGGCGCGcGCu -3'
miRNA:   3'- -CGCUGCUaGAacaUGGGCCGCGUcCG- -5'
23598 5' -55.5 NC_005261.1 + 30003 0.71 0.660649
Target:  5'- aGCGGCGcGUCUgagcuCCCGGUGCucucGGCu -3'
miRNA:   3'- -CGCUGC-UAGAacau-GGGCCGCGu---CCG- -5'
23598 5' -55.5 NC_005261.1 + 75402 0.71 0.660649
Target:  5'- uCGACGAgggCgcg-GCCCGGCGCGuGCa -3'
miRNA:   3'- cGCUGCUa--GaacaUGGGCCGCGUcCG- -5'
23598 5' -55.5 NC_005261.1 + 41026 0.71 0.660649
Target:  5'- -aGACGAggucgucgUCgUUGUcCCCGGCGCcGGCc -3'
miRNA:   3'- cgCUGCU--------AG-AACAuGGGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 56242 0.71 0.660649
Target:  5'- -aGACGGUCgu---CCCgGGCGUGGGCa -3'
miRNA:   3'- cgCUGCUAGaacauGGG-CCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 33806 0.71 0.660649
Target:  5'- nCGGCGggCUUGUcuuugggcgGCCggggGGCGCGGGCc -3'
miRNA:   3'- cGCUGCuaGAACA---------UGGg---CCGCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.