miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 5' -51 NC_005261.1 + 40625 0.66 0.991468
Target:  5'- gCUGGUCGcGGACCacgaUGuuGgGCACGUc -3'
miRNA:   3'- -GACCAGUuUCUGGc---ACuuCgUGUGCA- -5'
23605 5' -51 NC_005261.1 + 91411 0.66 0.990222
Target:  5'- -cGG-CGAGGA-CGUGGAGCGCgACGc -3'
miRNA:   3'- gaCCaGUUUCUgGCACUUCGUG-UGCa -5'
23605 5' -51 NC_005261.1 + 105352 0.66 0.990222
Target:  5'- -cGGcCGugaggcAGGCCGUGAcaggcGGCGCGCGc -3'
miRNA:   3'- gaCCaGUu-----UCUGGCACU-----UCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 66552 0.66 0.987306
Target:  5'- gCUGGUC---GGCCGUGccGCGCuCGa -3'
miRNA:   3'- -GACCAGuuuCUGGCACuuCGUGuGCa -5'
23605 5' -51 NC_005261.1 + 11998 0.66 0.987306
Target:  5'- -cGGcUCGAAGcaguccuCCGUGAAGCGCuCGc -3'
miRNA:   3'- gaCC-AGUUUCu------GGCACUUCGUGuGCa -5'
23605 5' -51 NC_005261.1 + 49736 0.66 0.98665
Target:  5'- gUGGUCGaagcuGAGGCCGacggugaUGAccgucguguagaucAGCACGCGg -3'
miRNA:   3'- gACCAGU-----UUCUGGC-------ACU--------------UCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 22971 0.66 0.985617
Target:  5'- -aGGcCGAGGACCGggagGAGGCG-GCGg -3'
miRNA:   3'- gaCCaGUUUCUGGCa---CUUCGUgUGCa -5'
23605 5' -51 NC_005261.1 + 67034 0.67 0.983761
Target:  5'- cCUGGcCGGAGAccagcccgcCCGUGuaggcGGGCGCGCGc -3'
miRNA:   3'- -GACCaGUUUCU---------GGCAC-----UUCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 94764 0.67 0.983761
Target:  5'- uCUGGuUCGAGGA-CGUGgcGcCGCGCGa -3'
miRNA:   3'- -GACC-AGUUUCUgGCACuuC-GUGUGCa -5'
23605 5' -51 NC_005261.1 + 55319 0.67 0.983761
Target:  5'- -gGGUCAGGGgguGCUGUGggGCGgC-CGUc -3'
miRNA:   3'- gaCCAGUUUC---UGGCACuuCGU-GuGCA- -5'
23605 5' -51 NC_005261.1 + 106023 0.67 0.981729
Target:  5'- ----gCGAGGACCG-GAGGCACGCc- -3'
miRNA:   3'- gaccaGUUUCUGGCaCUUCGUGUGca -5'
23605 5' -51 NC_005261.1 + 136246 0.67 0.979512
Target:  5'- -aGGgcaGAGGGCCGaGAgaaGGCACGCGa -3'
miRNA:   3'- gaCCag-UUUCUGGCaCU---UCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 80066 0.68 0.971664
Target:  5'- -cGGgcgCGGGGGgCGUGggGgACGCGg -3'
miRNA:   3'- gaCCa--GUUUCUgGCACuuCgUGUGCa -5'
23605 5' -51 NC_005261.1 + 114773 0.68 0.971664
Target:  5'- uCUGGcCcugauGAcGGCCGaGAAGCACACGa -3'
miRNA:   3'- -GACCaGu----UU-CUGGCaCUUCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 92794 0.68 0.961856
Target:  5'- -gGGUCGGGGuCCGgucgccGGGCGCGCGg -3'
miRNA:   3'- gaCCAGUUUCuGGCac----UUCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 54075 0.68 0.961856
Target:  5'- -cGGUCGAAGGCCGcgcgGAccGC-CACGUu -3'
miRNA:   3'- gaCCAGUUUCUGGCa---CUu-CGuGUGCA- -5'
23605 5' -51 NC_005261.1 + 57802 0.69 0.94991
Target:  5'- -cGGgcgcgCGAAGGCCGUGAAGgCGaaggggucCACGUg -3'
miRNA:   3'- gaCCa----GUUUCUGGCACUUC-GU--------GUGCA- -5'
23605 5' -51 NC_005261.1 + 34191 0.69 0.94543
Target:  5'- gUGGg-GAGGGCCG-GAGGCAgACGg -3'
miRNA:   3'- gACCagUUUCUGGCaCUUCGUgUGCa -5'
23605 5' -51 NC_005261.1 + 56352 0.69 0.940695
Target:  5'- -gGGUUAAAuACCGgcaccggcGAGGCGCACGUc -3'
miRNA:   3'- gaCCAGUUUcUGGCa-------CUUCGUGUGCA- -5'
23605 5' -51 NC_005261.1 + 128886 0.69 0.940695
Target:  5'- -aGG-CGGGGGCCGgguggGAGGCGgGCGUc -3'
miRNA:   3'- gaCCaGUUUCUGGCa----CUUCGUgUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.