miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 3' -61 NC_005261.1 + 137868 0.68 0.563492
Target:  5'- cCCUGGUGCucccggggCCAGCggUGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGca------GGUCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 135130 0.66 0.642802
Target:  5'- uCCgCAGCGCGgCgGGggagacgaCGCCGCCUCc -3'
miRNA:   3'- -GG-GUCGCGCaGgUCgaa-----GCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 134288 0.68 0.534326
Target:  5'- uCUgGGCGUggGUCCAcg-UCGCCGCCUUc -3'
miRNA:   3'- -GGgUCGCG--CAGGUcgaAGCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 134096 0.78 0.143294
Target:  5'- uCUCGGCGCG-CCGGCgcgcgcUCGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGCaGGUCGa-----AGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 133277 0.72 0.343759
Target:  5'- aCCAGgGCG-CCGGCgc--CCGCCUCg -3'
miRNA:   3'- gGGUCgCGCaGGUCGaagcGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 133130 0.67 0.583172
Target:  5'- gCguGCGCGUCUcccuGCggugcgcgcUCGCCGCCgUCg -3'
miRNA:   3'- gGguCGCGCAGGu---CGa--------AGCGGCGG-AG- -5'
23606 3' -61 NC_005261.1 + 131765 0.69 0.496318
Target:  5'- gCCGGCGCGgCgGGCg-CGCCGCUg- -3'
miRNA:   3'- gGGUCGCGCaGgUCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 131424 0.69 0.477775
Target:  5'- gCCGGCaGCGgcgCCGGCgccccccuugCGCCgcGCCUCg -3'
miRNA:   3'- gGGUCG-CGCa--GGUCGaa--------GCGG--CGGAG- -5'
23606 3' -61 NC_005261.1 + 131034 0.78 0.143294
Target:  5'- gCCgAGCGCG-CCGGCgaCGCCGCCa- -3'
miRNA:   3'- -GGgUCGCGCaGGUCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 130848 0.66 0.652754
Target:  5'- aCCUugcgcGCGCGcCCGGCcgggCGCCgcggccugGCCUCg -3'
miRNA:   3'- -GGGu----CGCGCaGGUCGaa--GCGG--------CGGAG- -5'
23606 3' -61 NC_005261.1 + 129837 0.7 0.441759
Target:  5'- gCCCAGCGCGcgcUCCAGCaccgcgaCGUCgGCCaUCa -3'
miRNA:   3'- -GGGUCGCGC---AGGUCGaa-----GCGG-CGG-AG- -5'
23606 3' -61 NC_005261.1 + 129304 0.7 0.40733
Target:  5'- cCCCGGCGCcccgcgCCuGCgcuggCGCCGCgUCg -3'
miRNA:   3'- -GGGUCGCGca----GGuCGaa---GCGGCGgAG- -5'
23606 3' -61 NC_005261.1 + 129195 0.72 0.333394
Target:  5'- gCCAGCGCGUggCgCAGCUgcuucugcuggugCGgCGCCUCa -3'
miRNA:   3'- gGGUCGCGCA--G-GUCGAa------------GCgGCGGAG- -5'
23606 3' -61 NC_005261.1 + 126911 0.66 0.682487
Target:  5'- gCCCAGCuCGgucugcauccguUCCAGCagCGCgGCCa- -3'
miRNA:   3'- -GGGUCGcGC------------AGGUCGaaGCGgCGGag -5'
23606 3' -61 NC_005261.1 + 126534 0.67 0.602985
Target:  5'- gCCCGcCGCGcCuCGGCcacgCGCCGCCgUCg -3'
miRNA:   3'- -GGGUcGCGCaG-GUCGaa--GCGGCGG-AG- -5'
23606 3' -61 NC_005261.1 + 126454 0.75 0.212217
Target:  5'- gCCAGcCGCG-CCAGCg-CGCuCGCCUCg -3'
miRNA:   3'- gGGUC-GCGCaGGUCGaaGCG-GCGGAG- -5'
23606 3' -61 NC_005261.1 + 125345 0.69 0.51518
Target:  5'- gCgCAGgGCGUCCAGCaggCuCCGCCg- -3'
miRNA:   3'- -GgGUCgCGCAGGUCGaa-GcGGCGGag -5'
23606 3' -61 NC_005261.1 + 125207 0.66 0.662691
Target:  5'- gUCGGCGCuGUCgCuGCUaUCGCCGUCg- -3'
miRNA:   3'- gGGUCGCG-CAG-GuCGA-AGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 124848 0.66 0.672604
Target:  5'- uCCUcGCGCagGUCUgcGGCgUCGUCGCCUUc -3'
miRNA:   3'- -GGGuCGCG--CAGG--UCGaAGCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 123831 0.71 0.398989
Target:  5'- uUCGGCGuCGUgCAGCgucgCGCUGCCUa -3'
miRNA:   3'- gGGUCGC-GCAgGUCGaa--GCGGCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.