miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 3' -62 NC_005261.1 + 93479 0.67 0.545511
Target:  5'- gGGGcGCGCGUCGCCCg-CGGCGa---- -3'
miRNA:   3'- -UCC-CGUGCAGCGGGagGUCGCcagac -5'
23607 3' -62 NC_005261.1 + 109341 0.67 0.545511
Target:  5'- cGGGGUcggcggccGCGUCGCCgUCCAGCcGcUCg- -3'
miRNA:   3'- -UCCCG--------UGCAGCGGgAGGUCGcC-AGac -5'
23607 3' -62 NC_005261.1 + 61947 0.67 0.526297
Target:  5'- cGGGGCGCGcgccgaccgCGUCCcCCAGCcgGGUCg- -3'
miRNA:   3'- -UCCCGUGCa--------GCGGGaGGUCG--CCAGac -5'
23607 3' -62 NC_005261.1 + 11055 0.67 0.526297
Target:  5'- cGGGCGC--CGCCCaggcgccgCCAGCGcGUCUa -3'
miRNA:   3'- uCCCGUGcaGCGGGa-------GGUCGC-CAGAc -5'
23607 3' -62 NC_005261.1 + 83601 0.67 0.525343
Target:  5'- --aGCGCGUCGCUCUCCGccgcggcGUGGUCc- -3'
miRNA:   3'- uccCGUGCAGCGGGAGGU-------CGCCAGac -5'
23607 3' -62 NC_005261.1 + 34937 0.68 0.516785
Target:  5'- gGGGGCGgcCGgcgCGaCCCgggcCCGGCGGcCUGg -3'
miRNA:   3'- -UCCCGU--GCa--GC-GGGa---GGUCGCCaGAC- -5'
23607 3' -62 NC_005261.1 + 17547 0.68 0.516785
Target:  5'- gGGcGGCGCGggccCGCCgUUCGGCGGUg-- -3'
miRNA:   3'- -UC-CCGUGCa---GCGGgAGGUCGCCAgac -5'
23607 3' -62 NC_005261.1 + 93542 0.68 0.507343
Target:  5'- cGcGCGCGcCGCCCagUAGCGGUCg- -3'
miRNA:   3'- uCcCGUGCaGCGGGagGUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 16293 0.68 0.497975
Target:  5'- gGGGGCGcCGUCggGCCCagCGGCGGcCg- -3'
miRNA:   3'- -UCCCGU-GCAG--CGGGagGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 63026 0.68 0.497975
Target:  5'- cGGGCGCcggCGCCCgcggCgaGGCGGUCg- -3'
miRNA:   3'- uCCCGUGca-GCGGGa---Gg-UCGCCAGac -5'
23607 3' -62 NC_005261.1 + 119655 0.68 0.497975
Target:  5'- cGGcGGCGCG-CGCCUggagcucugguUCCAGCGcGUCg- -3'
miRNA:   3'- -UC-CCGUGCaGCGGG-----------AGGUCGC-CAGac -5'
23607 3' -62 NC_005261.1 + 33111 0.68 0.488685
Target:  5'- cGGGCAC-UCGCCCUCC-GCGa---- -3'
miRNA:   3'- uCCCGUGcAGCGGGAGGuCGCcagac -5'
23607 3' -62 NC_005261.1 + 33866 0.69 0.461322
Target:  5'- gAGGGCccccCGcCGCCCgccUCCGGCGcGUCa- -3'
miRNA:   3'- -UCCCGu---GCaGCGGG---AGGUCGC-CAGac -5'
23607 3' -62 NC_005261.1 + 18731 0.69 0.461322
Target:  5'- cGGGCGCGgggCGCCCcaaaaCAGCGGcCc- -3'
miRNA:   3'- uCCCGUGCa--GCGGGag---GUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 40726 0.69 0.461322
Target:  5'- gGGGGCGCGUgggcguaGCCCaUCAGCguguaugugucGGUCUGc -3'
miRNA:   3'- -UCCCGUGCAg------CGGGaGGUCG-----------CCAGAC- -5'
23607 3' -62 NC_005261.1 + 44274 0.69 0.461322
Target:  5'- gGGGGgGCGggGCCCgccgCCAGCGG-Cg- -3'
miRNA:   3'- -UCCCgUGCagCGGGa---GGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 90209 0.69 0.443537
Target:  5'- gGGGGCgGCGgagCGCCCUCgcgCGGCGGg--- -3'
miRNA:   3'- -UCCCG-UGCa--GCGGGAG---GUCGCCagac -5'
23607 3' -62 NC_005261.1 + 43809 0.69 0.443537
Target:  5'- gGGGGCGcCGggcgCGCCCUCC-GUGGagaagCUGc -3'
miRNA:   3'- -UCCCGU-GCa---GCGGGAGGuCGCCa----GAC- -5'
23607 3' -62 NC_005261.1 + 43849 0.69 0.43479
Target:  5'- gAGGGCgaggacgcggccGCGUCGUCCUC-GGCGGcgcggCUGa -3'
miRNA:   3'- -UCCCG------------UGCAGCGGGAGgUCGCCa----GAC- -5'
23607 3' -62 NC_005261.1 + 31323 0.69 0.43479
Target:  5'- cGGGCGCGcUCGCCg-CCAGCGcGccgCUGc -3'
miRNA:   3'- uCCCGUGC-AGCGGgaGGUCGC-Ca--GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.