miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 132514 0.71 0.400339
Target:  5'- -cGaCGCGGGCUGGGACgagUacgagcgcgcccucGCGCGCGAGg -3'
miRNA:   3'- guC-GUGCCCGACCUUG---A--------------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 38520 0.71 0.4029
Target:  5'- aGGCGCGcGCUGG--CUGCGCGCGc- -3'
miRNA:   3'- gUCGUGCcCGACCuuGACGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 89109 0.71 0.4029
Target:  5'- uGGCGCGcGCgUGGcACUGCGCGCGc- -3'
miRNA:   3'- gUCGUGCcCG-ACCuUGACGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 12640 0.71 0.411513
Target:  5'- cCGGCGCGGuCUGGGGCcGCgccgGCGCGAc -3'
miRNA:   3'- -GUCGUGCCcGACCUUGaCG----CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 49567 0.71 0.411513
Target:  5'- gCAGCAUGGGCgugaacacgGGcuCgggGCGCGCGGc -3'
miRNA:   3'- -GUCGUGCCCGa--------CCuuGa--CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 29813 0.71 0.419361
Target:  5'- gCGGCGCGGGCgcccGcgccgcgcucgccGAGCUGCGCGCc-- -3'
miRNA:   3'- -GUCGUGCCCGa---C-------------CUUGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 110245 0.71 0.420238
Target:  5'- gCGGCGCGGcGCccggGGGGCUGCGgGCc-- -3'
miRNA:   3'- -GUCGUGCC-CGa---CCUUGACGCgCGcuu -5'
23609 3' -59.7 NC_005261.1 + 123153 0.7 0.429075
Target:  5'- aGGCAUacgaGGGC-GGGGCggGCGCGCGGg -3'
miRNA:   3'- gUCGUG----CCCGaCCUUGa-CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 98050 0.7 0.429075
Target:  5'- gCGGcCGCGGGCggcGGGACcGCGgGCGGc -3'
miRNA:   3'- -GUC-GUGCCCGa--CCUUGaCGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 17170 0.7 0.438019
Target:  5'- gCGGCGCGGGCgUGGGcagccCUGC-CGCGGc -3'
miRNA:   3'- -GUCGUGCCCG-ACCUu----GACGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 13688 0.7 0.44707
Target:  5'- -cGCGCGGGCgUGGGGCgggGCGgGCu-- -3'
miRNA:   3'- guCGUGCCCG-ACCUUGa--CGCgCGcuu -5'
23609 3' -59.7 NC_005261.1 + 92134 0.7 0.44707
Target:  5'- aUAGCuCGGGCUGGGccaggaccucgGCgaGCGCGCGc- -3'
miRNA:   3'- -GUCGuGCCCGACCU-----------UGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 38941 0.7 0.44707
Target:  5'- gCGGC-CGGGC-GGGccGCgGCGCGCGGg -3'
miRNA:   3'- -GUCGuGCCCGaCCU--UGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 36981 0.7 0.456225
Target:  5'- uCGGUGCGGGCUccagccGGAgcccgcggGCUGCGCGgGGc -3'
miRNA:   3'- -GUCGUGCCCGA------CCU--------UGACGCGCgCUu -5'
23609 3' -59.7 NC_005261.1 + 3400 0.7 0.465478
Target:  5'- cCGGCacuuccgccgGCGGGCU-GAAgaGCGCGCGGg -3'
miRNA:   3'- -GUCG----------UGCCCGAcCUUgaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 63081 0.7 0.474829
Target:  5'- aCAGCgGCGGGUacgccuccUGGAAgaGCGCGCa-- -3'
miRNA:   3'- -GUCG-UGCCCG--------ACCUUgaCGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 93466 0.7 0.478595
Target:  5'- cCAGCGCGGuGCcgGGGcgcgcgucgcccgcgGCgaaGCGCGCGAAc -3'
miRNA:   3'- -GUCGUGCC-CGa-CCU---------------UGa--CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 126308 0.69 0.484272
Target:  5'- aCAGCACGGGgUGGAACagGCaG-GUGAAc -3'
miRNA:   3'- -GUCGUGCCCgACCUUGa-CG-CgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 48029 0.69 0.484272
Target:  5'- gAGCA-GGGCgaGGAGCacgcGCGCGCGGu -3'
miRNA:   3'- gUCGUgCCCGa-CCUUGa---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 129663 0.69 0.484272
Target:  5'- gCGGCAgGGGC-GGGACcggggGCGuCGCGAc -3'
miRNA:   3'- -GUCGUgCCCGaCCUUGa----CGC-GCGCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.