miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 136600 0.67 0.654221
Target:  5'- cCGGCGCa-GCgUGGAGCgGCGCGCGc- -3'
miRNA:   3'- -GUCGUGccCG-ACCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 135659 0.69 0.528791
Target:  5'- gGGCGCGGGCggcccucgcucgaGGAGCUcugcGCcGCGCGGc -3'
miRNA:   3'- gUCGUGCCCGa------------CCUUGA----CG-CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 135452 0.78 0.14089
Target:  5'- gCGGCGCGGGCgcugcgGGAccucguACUGCGCgGCGAGa -3'
miRNA:   3'- -GUCGUGCCCGa-----CCU------UGACGCG-CGCUU- -5'
23609 3' -59.7 NC_005261.1 + 133362 0.69 0.532737
Target:  5'- -cGCGCaGGGCUucGGcugcCUGCGCGCGGc -3'
miRNA:   3'- guCGUG-CCCGA--CCuu--GACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 133228 0.68 0.586885
Target:  5'- gAGCugGGGCccuacauggcGGAGCacuacccgcaggcgGCGCGCGAGu -3'
miRNA:   3'- gUCGugCCCGa---------CCUUGa-------------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 132514 0.71 0.400339
Target:  5'- -cGaCGCGGGCUGGGACgagUacgagcgcgcccucGCGCGCGAGg -3'
miRNA:   3'- guC-GUGCCCGACCUUG---A--------------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 131953 0.66 0.664413
Target:  5'- -cGCGCccgucuaccGGG-UGGAGCUGCcGCGCGGc -3'
miRNA:   3'- guCGUG---------CCCgACCUUGACG-CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 131901 0.68 0.571705
Target:  5'- aCGGCGCGcacccGCUGGAcggGCUuuuuggcGCGCGCGGGa -3'
miRNA:   3'- -GUCGUGCc----CGACCU---UGA-------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 129663 0.69 0.484272
Target:  5'- gCGGCAgGGGC-GGGACcggggGCGuCGCGAc -3'
miRNA:   3'- -GUCGUgCCCGaCCUUGa----CGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 128748 0.67 0.633792
Target:  5'- uCGGCAucgucgacuCGGGCUaccagGGAaaACUGCGCGCc-- -3'
miRNA:   3'- -GUCGU---------GCCCGA-----CCU--UGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 127701 0.72 0.330739
Target:  5'- gCGGCGCcGGa-GGAGCUGCGCGUGGc -3'
miRNA:   3'- -GUCGUGcCCgaCCUUGACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 127641 0.66 0.704836
Target:  5'- aCGGCgGCGGcGCcGGGGg-GCGCGCGGGu -3'
miRNA:   3'- -GUCG-UGCC-CGaCCUUgaCGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 127214 0.67 0.644011
Target:  5'- gCGGCGCGcGGCUuaAGCcGCGCGCGu- -3'
miRNA:   3'- -GUCGUGC-CCGAccUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 126950 0.74 0.274971
Target:  5'- gGGCGcCGGGCgcgGGGGCgGCaGCGCGAAc -3'
miRNA:   3'- gUCGU-GCCCGa--CCUUGaCG-CGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 126308 0.69 0.484272
Target:  5'- aCAGCACGGGgUGGAACagGCaG-GUGAAc -3'
miRNA:   3'- -GUCGUGCCCgACCUUGa-CG-CgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 125371 0.69 0.532737
Target:  5'- gGGCAgaggGGcGCUGGAACgggUGCGUGCGGu -3'
miRNA:   3'- gUCGUg---CC-CGACCUUG---ACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 123153 0.7 0.429075
Target:  5'- aGGCAUacgaGGGC-GGGGCggGCGCGCGGg -3'
miRNA:   3'- gUCGUG----CCCGaCCUUGa-CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 122034 0.67 0.654221
Target:  5'- -uGCGCGaaGC-GGcACUGCGCGCGGAu -3'
miRNA:   3'- guCGUGCc-CGaCCuUGACGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 121788 0.72 0.369619
Target:  5'- gCGGCcgGCGGGCUGGGcaggggGCGCGUGGc -3'
miRNA:   3'- -GUCG--UGCCCGACCUuga---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 120661 0.67 0.654221
Target:  5'- aGGCGCGGGCgcgccUGuGAuCUcGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCG-----AC-CUuGA-CGCGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.