miRNA display CGI


Results 21 - 40 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 66299 0.74 0.273067
Target:  5'- uGCGUCaGGcgcGGCACGGCCaCCG-AGGCGg -3'
miRNA:   3'- -CGCGGaCC---UCGUGCCGG-GGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 81175 0.74 0.276833
Target:  5'- uGCGCCcgagcucguacucGGGGCACGGCCgCGcGGGCGc -3'
miRNA:   3'- -CGCGGa------------CCUCGUGCCGGgGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 41652 0.74 0.285784
Target:  5'- uGCGCgUGGAG-GCGGCUCaUGUAGGCGc -3'
miRNA:   3'- -CGCGgACCUCgUGCCGGG-GCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 46568 0.73 0.292316
Target:  5'- aGCGCugCUGcGAGCGCGGCCUCGcgcGACa -3'
miRNA:   3'- -CGCG--GAC-CUCGUGCCGGGGCau-CUGc -5'
23611 5' -60.9 NC_005261.1 + 68269 0.73 0.298294
Target:  5'- cGCGCCUGcGcccgcgcGGCGgGGCCCCGgccgcGGGCGc -3'
miRNA:   3'- -CGCGGAC-C-------UCGUgCCGGGGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 93905 0.73 0.305728
Target:  5'- aGCGaCUGcGGGCGCGGCgCCCGcGGGCu -3'
miRNA:   3'- -CGCgGAC-CUCGUGCCG-GGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 61446 0.73 0.305728
Target:  5'- uGCGCCUGcAG-ACGGaCCCCGUGGAg- -3'
miRNA:   3'- -CGCGGACcUCgUGCC-GGGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 35706 0.73 0.312609
Target:  5'- uGgGCCgGGGGCucggugGCGGCCCCGgccgAGGCc -3'
miRNA:   3'- -CgCGGaCCUCG------UGCCGGGGCa---UCUGc -5'
23611 5' -60.9 NC_005261.1 + 75856 0.73 0.312609
Target:  5'- gGCGCCgacGGcGGCcccgACGGCgCCGUGGGCGc -3'
miRNA:   3'- -CGCGGa--CC-UCG----UGCCGgGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 21143 0.72 0.333953
Target:  5'- aGCGCgUGGugauuAGCACGGCCCUGccgagcagAGAUGc -3'
miRNA:   3'- -CGCGgACC-----UCGUGCCGGGGCa-------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 120670 0.72 0.341301
Target:  5'- cGCGCCUGuGAucucGCGCGcGCCCCGgcGGa- -3'
miRNA:   3'- -CGCGGAC-CU----CGUGC-CGGGGCauCUgc -5'
23611 5' -60.9 NC_005261.1 + 43352 0.72 0.348765
Target:  5'- uGUGCCUGGGGCugGuGCCgCUGc-GGCGg -3'
miRNA:   3'- -CGCGGACCUCGugC-CGG-GGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 32398 0.72 0.356345
Target:  5'- gGCGuCCcGGAGCGCGuGCCgccgCCGgcGACGg -3'
miRNA:   3'- -CGC-GGaCCUCGUGC-CGG----GGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 132617 0.72 0.36404
Target:  5'- cCGCCagGGGGCGCuGGCgCCGaGGACGc -3'
miRNA:   3'- cGCGGa-CCUCGUG-CCGgGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 118372 0.72 0.371849
Target:  5'- gGCG-CUGGGGCGCGcGgCCCG-AGGCGc -3'
miRNA:   3'- -CGCgGACCUCGUGC-CgGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 1065 0.72 0.371849
Target:  5'- gGCGCggGGGGC-UGGCCCCGcuccaGGGCGa -3'
miRNA:   3'- -CGCGgaCCUCGuGCCGGGGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 14967 0.71 0.379772
Target:  5'- cGUGCCUGGGGCgacugcGCGGCCgCGccGGCc -3'
miRNA:   3'- -CGCGGACCUCG------UGCCGGgGCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 90656 0.71 0.387807
Target:  5'- cUGCCUGGccGuCGCGGCCaCCGU-GACGa -3'
miRNA:   3'- cGCGGACCu-C-GUGCCGG-GGCAuCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33824 0.71 0.387807
Target:  5'- gGCgGCCggGGGGCGCgGGCCCCcuggcgcUGGGCGg -3'
miRNA:   3'- -CG-CGGa-CCUCGUG-CCGGGGc------AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 115843 0.71 0.387807
Target:  5'- gGCGCgUUGGcccGCGCGGCCCCcgccgAGGCGc -3'
miRNA:   3'- -CGCG-GACCu--CGUGCCGGGGca---UCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.