miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 103534 0.71 0.225816
Target:  5'- aUCCg--CCgCCUCCU-CGGCCCCCGg -3'
miRNA:   3'- gGGGaaaGGgGGAGGGcGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 91463 0.71 0.230999
Target:  5'- gCCCCg--CCCgcgCCUCCCaGCGGCgCCgCCGc -3'
miRNA:   3'- -GGGGaaaGGG---GGAGGG-CGCCG-GG-GGC- -5'
23612 3' -65.9 NC_005261.1 + 24886 0.71 0.236282
Target:  5'- uCCCCg--CCCCCUugCCCgGCGGgCgCCCCu -3'
miRNA:   3'- -GGGGaaaGGGGGA--GGG-CGCC-G-GGGGc -5'
23612 3' -65.9 NC_005261.1 + 2865 0.71 0.241666
Target:  5'- gUCCCUUucuuccuccuccUCCUCCUCCU-CGGCCCCg- -3'
miRNA:   3'- -GGGGAA------------AGGGGGAGGGcGCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 52082 0.71 0.247152
Target:  5'- cCCCUUUUUCCCCUCCCcCcuuCCCCCc -3'
miRNA:   3'- -GGGGAAAGGGGGAGGGcGcc-GGGGGc -5'
23612 3' -65.9 NC_005261.1 + 36037 0.71 0.247152
Target:  5'- gCCCCUa--CCCCgcgaCCCGCaGCCCaCCGc -3'
miRNA:   3'- -GGGGAaagGGGGa---GGGCGcCGGG-GGC- -5'
23612 3' -65.9 NC_005261.1 + 67750 0.71 0.25274
Target:  5'- gUCCUccUCCCCCUCgCCGUccgaggcgccGCCCCCGg -3'
miRNA:   3'- -GGGGaaAGGGGGAG-GGCGc---------CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 94445 0.71 0.255004
Target:  5'- uCCCCguccgcguccgcgUCCCCCUCCgCGuCGGCgucgUCCCGc -3'
miRNA:   3'- -GGGGaa-----------AGGGGGAGG-GC-GCCG----GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 66053 0.71 0.258432
Target:  5'- gCCag--CCCCgggCCCGCGGUCCCCu -3'
miRNA:   3'- gGGgaaaGGGGga-GGGCGCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 2902 0.71 0.258432
Target:  5'- uCCCCgggCCCCCccagcUCCUcCGGCCCCa- -3'
miRNA:   3'- -GGGGaaaGGGGG-----AGGGcGCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 5035 0.7 0.264228
Target:  5'- uCCUCUUccuccUCCCCCUCgucgUCGuCGGCCCCg- -3'
miRNA:   3'- -GGGGAA-----AGGGGGAG----GGC-GCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 137675 0.7 0.27013
Target:  5'- aCCCCggggCCCCCcaccgCCCcucgugcaGCGGgCCCCGc -3'
miRNA:   3'- -GGGGaaa-GGGGGa----GGG--------CGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 35658 0.7 0.27013
Target:  5'- gCCCCgcUCCCgCUCCCuGcCGGCcgcacCCCCGc -3'
miRNA:   3'- -GGGGaaAGGGgGAGGG-C-GCCG-----GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 28548 0.7 0.27013
Target:  5'- aCCCgg-CCCUgCUCgaCGCGGCCCgCCGg -3'
miRNA:   3'- gGGGaaaGGGG-GAGg-GCGCCGGG-GGC- -5'
23612 3' -65.9 NC_005261.1 + 21908 0.7 0.27013
Target:  5'- cUCUCUUUCCCCCUCC----GCCCCCc -3'
miRNA:   3'- -GGGGAAAGGGGGAGGgcgcCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 213 0.7 0.276137
Target:  5'- gCCgCCg--CCCCUggugCUCGCGGgCCCCGc -3'
miRNA:   3'- -GG-GGaaaGGGGGa---GGGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 137896 0.7 0.276137
Target:  5'- gCCgCCg--CCCCUggugCUCGCGGgCCCCGc -3'
miRNA:   3'- -GG-GGaaaGGGGGa---GGGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 37738 0.7 0.276137
Target:  5'- cCCCCcgUCgCCC-CCCGCGGgCgCCGc -3'
miRNA:   3'- -GGGGaaAGgGGGaGGGCGCCgGgGGC- -5'
23612 3' -65.9 NC_005261.1 + 14596 0.7 0.28225
Target:  5'- cCCCCcgUCCCUCUCCCac--CCCCCGc -3'
miRNA:   3'- -GGGGaaAGGGGGAGGGcgccGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 32309 0.7 0.28847
Target:  5'- cCCCCgccgCCgCCgcggCCGCGGCgCCCGg -3'
miRNA:   3'- -GGGGaaa-GGgGGag--GGCGCCGgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.