miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 84021 1.08 0.005193
Target:  5'- gCGCAAAGACGACGGAGAGACGCGAGUa -3'
miRNA:   3'- -GCGUUUCUGCUGCCUCUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 78506 0.79 0.352472
Target:  5'- aCGC-GAGAaGAUGGGGAGGCGCGAGc -3'
miRNA:   3'- -GCGuUUCUgCUGCCUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 90156 0.78 0.376828
Target:  5'- gGgGAGGAUGACGGGGAGGCG-GAGg -3'
miRNA:   3'- gCgUUUCUGCUGCCUCUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 97697 0.77 0.465747
Target:  5'- uGCcGGGGCGGUGGGGAGACgGCGGGUg -3'
miRNA:   3'- gCGuUUCUGCUGCCUCUCUG-CGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 97628 0.76 0.484818
Target:  5'- gGCGGAG-CgGGCGGAGcGGGCGCGGGUg -3'
miRNA:   3'- gCGUUUCuG-CUGCCUC-UCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 48133 0.76 0.484818
Target:  5'- gCGCGggaAAGAgGGgGGAGGGugGCGAGa -3'
miRNA:   3'- -GCGU---UUCUgCUgCCUCUCugCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 121126 0.76 0.514096
Target:  5'- gCGCGGAGGCG-CGGGcgcGAG-CGCGAGUa -3'
miRNA:   3'- -GCGUUUCUGCuGCCU---CUCuGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 78429 0.75 0.534011
Target:  5'- gGgGGGGGCGAUGGGGAGAagGCGGGg -3'
miRNA:   3'- gCgUUUCUGCUGCCUCUCUg-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 90132 0.75 0.574592
Target:  5'- gGCGAGGGCGA-GGAGGGGgGCGAu- -3'
miRNA:   3'- gCGUUUCUGCUgCCUCUCUgCGCUca -5'
23612 5' -53.8 NC_005261.1 + 34309 0.74 0.60549
Target:  5'- aGC-GAGAcCGACGGGGAGGC-CGAGg -3'
miRNA:   3'- gCGuUUCU-GCUGCCUCUCUGcGCUCa -5'
23612 5' -53.8 NC_005261.1 + 98351 0.74 0.626201
Target:  5'- aCGCGGGGGCGGgGGuG-GGCGCGGGc -3'
miRNA:   3'- -GCGUUUCUGCUgCCuCuCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 127643 0.73 0.657283
Target:  5'- gGCGgcGGCGcCGGGGGGcGCGCGGGUu -3'
miRNA:   3'- gCGUuuCUGCuGCCUCUC-UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 90205 0.73 0.667614
Target:  5'- gCGCGGGGGCGGCGGAGcGcccucGCGCGGc- -3'
miRNA:   3'- -GCGUUUCUGCUGCCUCuC-----UGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 96846 0.72 0.698392
Target:  5'- gGCcGGGGuCGACGGggggcucgGGGGGCGCGGGUa -3'
miRNA:   3'- gCGuUUCU-GCUGCC--------UCUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 98385 0.72 0.728657
Target:  5'- gCGCAAuaccGGCGugGGGGcGGGCGCGGa- -3'
miRNA:   3'- -GCGUUu---CUGCugCCUC-UCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 48172 0.72 0.738587
Target:  5'- gGCAGcgggGGugGACGGGGgaagggcaaacaGGGCGCGGGc -3'
miRNA:   3'- gCGUU----UCugCUGCCUC------------UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 78529 0.72 0.738587
Target:  5'- nGCGGAGGCGGCgaggggaaGGGGAGcCGCGAu- -3'
miRNA:   3'- gCGUUUCUGCUG--------CCUCUCuGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 73594 0.72 0.738587
Target:  5'- gGCGGAGGCGGCGGccgcGAGcGCGCGGc- -3'
miRNA:   3'- gCGUUUCUGCUGCCu---CUC-UGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 59060 0.71 0.748422
Target:  5'- gCGCGcgcGGCcGCGGAGAGcgcGCGCGGGUg -3'
miRNA:   3'- -GCGUuu-CUGcUGCCUCUC---UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 77761 0.71 0.758152
Target:  5'- aCGCAGccgGGGCGGCGG--GGACGaCGAGg -3'
miRNA:   3'- -GCGUU---UCUGCUGCCucUCUGC-GCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.