miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 462 0.7 0.831092
Target:  5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3'
miRNA:   3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 993 0.69 0.855618
Target:  5'- aGCGGAGGaGACGGGGgcgGGGgGCGGGg -3'
miRNA:   3'- gCGUUUCUgCUGCCUC---UCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 1043 0.69 0.847641
Target:  5'- gGCGGcGGGCGGCGGcguuAGcGGCGCGGGg -3'
miRNA:   3'- gCGUU-UCUGCUGCC----UCuCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 1116 0.7 0.804897
Target:  5'- aCGCGGAcGACGA-GGAG-GACGCgGAGg -3'
miRNA:   3'- -GCGUUU-CUGCUgCCUCuCUGCG-CUCa -5'
23612 5' -53.8 NC_005261.1 + 1410 0.69 0.863388
Target:  5'- cCGCGgcGGCGGCGGGGGcGGCGCc--- -3'
miRNA:   3'- -GCGUuuCUGCUGCCUCU-CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 1848 0.67 0.94338
Target:  5'- gCGCGAAGGCGcCGGGcccgaAGACGCGc-- -3'
miRNA:   3'- -GCGUUUCUGCuGCCUc----UCUGCGCuca -5'
23612 5' -53.8 NC_005261.1 + 5321 0.67 0.938677
Target:  5'- --gGAGGGgGuaGgGGAGAGGCGCGGGUc -3'
miRNA:   3'- gcgUUUCUgC--UgCCUCUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 5371 0.67 0.933731
Target:  5'- -aCGGAGACGGgGGAGGGAgG-GAGg -3'
miRNA:   3'- gcGUUUCUGCUgCCUCUCUgCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 5545 0.68 0.919723
Target:  5'- gCGCAgcGAGACGgggggcgcccgagcgGCGGAGAugggGGCGcCGAGg -3'
miRNA:   3'- -GCGU--UUCUGC---------------UGCCUCU----CUGC-GCUCa -5'
23612 5' -53.8 NC_005261.1 + 5865 0.67 0.923103
Target:  5'- gGUcucGACGACGGAGAGAgGCuGGc -3'
miRNA:   3'- gCGuuuCUGCUGCCUCUCUgCGcUCa -5'
23612 5' -53.8 NC_005261.1 + 7296 0.66 0.947406
Target:  5'- gGCAGAGggagagaAgGGgGGAGAGagaGCGCGAGa -3'
miRNA:   3'- gCGUUUC-------UgCUgCCUCUC---UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 7977 0.69 0.878279
Target:  5'- uCGCcGAGGCGGCccggugGGAGAGGgGgGAGa -3'
miRNA:   3'- -GCGuUUCUGCUG------CCUCUCUgCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 8844 0.67 0.923103
Target:  5'- gGCGGGGAcaggcCGugGGAGGGgccucccucuuACGUGAGg -3'
miRNA:   3'- gCGUUUCU-----GCugCCUCUC-----------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 10615 0.67 0.94338
Target:  5'- aGCGAGGACGACuacGAG-GACGacuaCGAGg -3'
miRNA:   3'- gCGUUUCUGCUGc--CUCuCUGC----GCUCa -5'
23612 5' -53.8 NC_005261.1 + 11078 0.69 0.878279
Target:  5'- gCGCGucuaGGGACggGACGGGGcgGGACGCGAc- -3'
miRNA:   3'- -GCGU----UUCUG--CUGCCUC--UCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 11465 0.7 0.822535
Target:  5'- aGCGGagcGGGCG-CGGAGGGGCgggGCGGGg -3'
miRNA:   3'- gCGUU---UCUGCuGCCUCUCUG---CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 12423 0.68 0.892271
Target:  5'- -cCAGGGGCGGCGGAGGGcuUGCGGcGUc -3'
miRNA:   3'- gcGUUUCUGCUGCCUCUCu-GCGCU-CA- -5'
23612 5' -53.8 NC_005261.1 + 13117 0.66 0.963333
Target:  5'- gGCGucGGCGGCcGcGGGGCGCGuGUg -3'
miRNA:   3'- gCGUuuCUGCUGcCuCUCUGCGCuCA- -5'
23612 5' -53.8 NC_005261.1 + 13687 0.7 0.813801
Target:  5'- gCGCGcGGGCGugGGgcggggcgggcuGGGGGCGgGGGUg -3'
miRNA:   3'- -GCGUuUCUGCugCC------------UCUCUGCgCUCA- -5'
23612 5' -53.8 NC_005261.1 + 14147 0.69 0.855618
Target:  5'- uCGCGAGGACGcuccagccgcgaACGGcgcgcgucucGGGGCGCGGGUc -3'
miRNA:   3'- -GCGUUUCUGC------------UGCCu---------CUCUGCGCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.