miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 16177 0.69 0.878279
Target:  5'- gGCGcGGGCGugGcGGGGGugGgCGGGg -3'
miRNA:   3'- gCGUuUCUGCugC-CUCUCugC-GCUCa -5'
23612 5' -53.8 NC_005261.1 + 20571 0.67 0.94338
Target:  5'- gCGCAgcGGCGcCGGc--GGCGCGGGUg -3'
miRNA:   3'- -GCGUuuCUGCuGCCucuCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 22103 0.68 0.905327
Target:  5'- gCGgGAGGGCGguguGCGGAGAGuGCGUGcGGUa -3'
miRNA:   3'- -GCgUUUCUGC----UGCCUCUC-UGCGC-UCA- -5'
23612 5' -53.8 NC_005261.1 + 22578 0.66 0.963333
Target:  5'- gGgGGAGAgCGGCGGAGGcGGCGCa--- -3'
miRNA:   3'- gCgUUUCU-GCUGCCUCU-CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 22903 0.69 0.863388
Target:  5'- aCGaCGAGGACGAC-GAG-GACGaCGAGg -3'
miRNA:   3'- -GC-GUUUCUGCUGcCUCuCUGC-GCUCa -5'
23612 5' -53.8 NC_005261.1 + 23465 0.66 0.947841
Target:  5'- gCGCcAGGcccGCGGCGGcGAGuGCGCGGGc -3'
miRNA:   3'- -GCGuUUC---UGCUGCCuCUC-UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 23541 0.66 0.952063
Target:  5'- gGCAGAGGCGGCaGGAGccguCGCaGGUg -3'
miRNA:   3'- gCGUUUCUGCUG-CCUCucu-GCGcUCA- -5'
23612 5' -53.8 NC_005261.1 + 24715 0.71 0.795833
Target:  5'- gGCAGGGuAUGugGGAGGGgcucuuuuACGUGAGg -3'
miRNA:   3'- gCGUUUC-UGCugCCUCUC--------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 25973 0.66 0.947406
Target:  5'- cCGCAGGGugGAgCGGGaaacgauGAGGgGUGGGg -3'
miRNA:   3'- -GCGUUUCugCU-GCCU-------CUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 26877 0.67 0.923103
Target:  5'- gGCgGGGGugGGUGGGGGGGgGCGGGg -3'
miRNA:   3'- gCG-UUUCugCUGCCUCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 27725 0.68 0.917421
Target:  5'- cCGC-GGGAgGAgCGGAGAcGCGCGGGc -3'
miRNA:   3'- -GCGuUUCUgCU-GCCUCUcUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 28009 0.68 0.905327
Target:  5'- cCGCGAaaggGGGcCGGCGGGGAGGagaGgGAGg -3'
miRNA:   3'- -GCGUU----UCU-GCUGCCUCUCUg--CgCUCa -5'
23612 5' -53.8 NC_005261.1 + 28253 0.67 0.94338
Target:  5'- aGCGGGGGCugcuCGGGGGGGCGCu--- -3'
miRNA:   3'- gCGUUUCUGcu--GCCUCUCUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 29426 0.66 0.963333
Target:  5'- cCGCGGGGcccGCGGCcguguucgugccGGAGAuggggGACGCGGGg -3'
miRNA:   3'- -GCGUUUC---UGCUG------------CCUCU-----CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 30450 0.69 0.878279
Target:  5'- gGgGAGGACGAggacgGGGGGGACGgGGGg -3'
miRNA:   3'- gCgUUUCUGCUg----CCUCUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 30686 0.7 0.831092
Target:  5'- gGaCGGGGACgggGACGGGGAGGCccGCGGGa -3'
miRNA:   3'- gC-GUUUCUG---CUGCCUCUCUG--CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 32917 0.71 0.786617
Target:  5'- gCGCGuggGGGGCGGCGGgcgggGGGGGgGCGGGg -3'
miRNA:   3'- -GCGU---UUCUGCUGCC-----UCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 33611 0.69 0.863388
Target:  5'- gGCGcGGGCGGCGGggcccGGGGGCGCGc-- -3'
miRNA:   3'- gCGUuUCUGCUGCC-----UCUCUGCGCuca -5'
23612 5' -53.8 NC_005261.1 + 33808 0.7 0.813801
Target:  5'- gGCGGgcuugucuuuGGGCGGCcGGGGGGCGCGGGc -3'
miRNA:   3'- gCGUU----------UCUGCUGcCUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 34309 0.74 0.60549
Target:  5'- aGC-GAGAcCGACGGGGAGGC-CGAGg -3'
miRNA:   3'- gCGuUUCU-GCUGCCUCUCUGcGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.