Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23612 | 5' | -53.8 | NC_005261.1 | + | 16177 | 0.69 | 0.878279 |
Target: 5'- gGCGcGGGCGugGcGGGGGugGgCGGGg -3' miRNA: 3'- gCGUuUCUGCugC-CUCUCugC-GCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 20571 | 0.67 | 0.94338 |
Target: 5'- gCGCAgcGGCGcCGGc--GGCGCGGGUg -3' miRNA: 3'- -GCGUuuCUGCuGCCucuCUGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 22103 | 0.68 | 0.905327 |
Target: 5'- gCGgGAGGGCGguguGCGGAGAGuGCGUGcGGUa -3' miRNA: 3'- -GCgUUUCUGC----UGCCUCUC-UGCGC-UCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 22578 | 0.66 | 0.963333 |
Target: 5'- gGgGGAGAgCGGCGGAGGcGGCGCa--- -3' miRNA: 3'- gCgUUUCU-GCUGCCUCU-CUGCGcuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 22903 | 0.69 | 0.863388 |
Target: 5'- aCGaCGAGGACGAC-GAG-GACGaCGAGg -3' miRNA: 3'- -GC-GUUUCUGCUGcCUCuCUGC-GCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 23465 | 0.66 | 0.947841 |
Target: 5'- gCGCcAGGcccGCGGCGGcGAGuGCGCGGGc -3' miRNA: 3'- -GCGuUUC---UGCUGCCuCUC-UGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 23541 | 0.66 | 0.952063 |
Target: 5'- gGCAGAGGCGGCaGGAGccguCGCaGGUg -3' miRNA: 3'- gCGUUUCUGCUG-CCUCucu-GCGcUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 24715 | 0.71 | 0.795833 |
Target: 5'- gGCAGGGuAUGugGGAGGGgcucuuuuACGUGAGg -3' miRNA: 3'- gCGUUUC-UGCugCCUCUC--------UGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 25973 | 0.66 | 0.947406 |
Target: 5'- cCGCAGGGugGAgCGGGaaacgauGAGGgGUGGGg -3' miRNA: 3'- -GCGUUUCugCU-GCCU-------CUCUgCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 26877 | 0.67 | 0.923103 |
Target: 5'- gGCgGGGGugGGUGGGGGGGgGCGGGg -3' miRNA: 3'- gCG-UUUCugCUGCCUCUCUgCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 27725 | 0.68 | 0.917421 |
Target: 5'- cCGC-GGGAgGAgCGGAGAcGCGCGGGc -3' miRNA: 3'- -GCGuUUCUgCU-GCCUCUcUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 28009 | 0.68 | 0.905327 |
Target: 5'- cCGCGAaaggGGGcCGGCGGGGAGGagaGgGAGg -3' miRNA: 3'- -GCGUU----UCU-GCUGCCUCUCUg--CgCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 28253 | 0.67 | 0.94338 |
Target: 5'- aGCGGGGGCugcuCGGGGGGGCGCu--- -3' miRNA: 3'- gCGUUUCUGcu--GCCUCUCUGCGcuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 29426 | 0.66 | 0.963333 |
Target: 5'- cCGCGGGGcccGCGGCcguguucgugccGGAGAuggggGACGCGGGg -3' miRNA: 3'- -GCGUUUC---UGCUG------------CCUCU-----CUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 30450 | 0.69 | 0.878279 |
Target: 5'- gGgGAGGACGAggacgGGGGGGACGgGGGg -3' miRNA: 3'- gCgUUUCUGCUg----CCUCUCUGCgCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 30686 | 0.7 | 0.831092 |
Target: 5'- gGaCGGGGACgggGACGGGGAGGCccGCGGGa -3' miRNA: 3'- gC-GUUUCUG---CUGCCUCUCUG--CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 32917 | 0.71 | 0.786617 |
Target: 5'- gCGCGuggGGGGCGGCGGgcgggGGGGGgGCGGGg -3' miRNA: 3'- -GCGU---UUCUGCUGCC-----UCUCUgCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 33611 | 0.69 | 0.863388 |
Target: 5'- gGCGcGGGCGGCGGggcccGGGGGCGCGc-- -3' miRNA: 3'- gCGUuUCUGCUGCC-----UCUCUGCGCuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 33808 | 0.7 | 0.813801 |
Target: 5'- gGCGGgcuugucuuuGGGCGGCcGGGGGGCGCGGGc -3' miRNA: 3'- gCGUU----------UCUGCUGcCUCUCUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 34309 | 0.74 | 0.60549 |
Target: 5'- aGC-GAGAcCGACGGGGAGGC-CGAGg -3' miRNA: 3'- gCGuUUCU-GCUGCCUCUCUGcGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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