Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23612 | 5' | -53.8 | NC_005261.1 | + | 35759 | 0.71 | 0.773477 |
Target: 5'- cCGCGAAGGCGGCucgggccgagacaGGAGGcccgcgggcgccauGGCGCGGGa -3' miRNA: 3'- -GCGUUUCUGCUG-------------CCUCU--------------CUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 93559 | 0.71 | 0.786617 |
Target: 5'- aGCGGucGACGGCGGugcggcGGGACGCGAu- -3' miRNA: 3'- gCGUUu-CUGCUGCCu-----CUCUGCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 32917 | 0.71 | 0.786617 |
Target: 5'- gCGCGuggGGGGCGGCGGgcgggGGGGGgGCGGGg -3' miRNA: 3'- -GCGU---UUCUGCUGCC-----UCUCUgCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 69335 | 0.71 | 0.794918 |
Target: 5'- gGCGAcaGCGACGGAGAcggcgacGACGCGGc- -3' miRNA: 3'- gCGUUucUGCUGCCUCU-------CUGCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 24715 | 0.71 | 0.795833 |
Target: 5'- gGCAGGGuAUGugGGAGGGgcucuuuuACGUGAGg -3' miRNA: 3'- gCGUUUC-UGCugCCUCUC--------UGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 105000 | 0.7 | 0.804897 |
Target: 5'- aGCGcGGGCGGCGGucGGGGCGCcAGg -3' miRNA: 3'- gCGUuUCUGCUGCCu-CUCUGCGcUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 1116 | 0.7 | 0.804897 |
Target: 5'- aCGCGGAcGACGA-GGAG-GACGCgGAGg -3' miRNA: 3'- -GCGUUU-CUGCUgCCUCuCUGCG-CUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 13687 | 0.7 | 0.813801 |
Target: 5'- gCGCGcGGGCGugGGgcggggcgggcuGGGGGCGgGGGUg -3' miRNA: 3'- -GCGUuUCUGCugCC------------UCUCUGCgCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 33808 | 0.7 | 0.813801 |
Target: 5'- gGCGGgcuugucuuuGGGCGGCcGGGGGGCGCGGGc -3' miRNA: 3'- gCGUU----------UCUGCUGcCUCUCUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 128116 | 0.7 | 0.822535 |
Target: 5'- gCGCGGGGuCGggccgaguGCGGAGAGAgGCGAc- -3' miRNA: 3'- -GCGUUUCuGC--------UGCCUCUCUgCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 11465 | 0.7 | 0.822535 |
Target: 5'- aGCGGagcGGGCG-CGGAGGGGCgggGCGGGg -3' miRNA: 3'- gCGUU---UCUGCuGCCUCUCUG---CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 129653 | 0.7 | 0.822535 |
Target: 5'- gGCGgcGGCGGCGGcAGGGGCGgGAc- -3' miRNA: 3'- gCGUuuCUGCUGCC-UCUCUGCgCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 134846 | 0.7 | 0.822535 |
Target: 5'- uGCGAGGAgGACGGGGAcaaGGCGCc--- -3' miRNA: 3'- gCGUUUCUgCUGCCUCU---CUGCGcuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 42836 | 0.7 | 0.822535 |
Target: 5'- aGCAccuGGGCGAUGGcAGAG-UGCGAGc -3' miRNA: 3'- gCGUu--UCUGCUGCC-UCUCuGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 138133 | 0.7 | 0.831092 |
Target: 5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3' miRNA: 3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 462 | 0.7 | 0.831092 |
Target: 5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3' miRNA: 3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 30686 | 0.7 | 0.831092 |
Target: 5'- gGaCGGGGACgggGACGGGGAGGCccGCGGGa -3' miRNA: 3'- gC-GUUUCUG---CUGCCUCUCUG--CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 134381 | 0.7 | 0.839463 |
Target: 5'- cCGCu--GGCGACGGcGAGA-GCGGGa -3' miRNA: 3'- -GCGuuuCUGCUGCCuCUCUgCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 50636 | 0.7 | 0.839463 |
Target: 5'- aCGC--GGGCGGCGGGGuGGCGCcGGc -3' miRNA: 3'- -GCGuuUCUGCUGCCUCuCUGCGcUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 80068 | 0.7 | 0.839463 |
Target: 5'- gGCGcGGGgGGCGuGGGGGACGCGGa- -3' miRNA: 3'- gCGUuUCUgCUGC-CUCUCUGCGCUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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