miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 35759 0.71 0.773477
Target:  5'- cCGCGAAGGCGGCucgggccgagacaGGAGGcccgcgggcgccauGGCGCGGGa -3'
miRNA:   3'- -GCGUUUCUGCUG-------------CCUCU--------------CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 32917 0.71 0.786617
Target:  5'- gCGCGuggGGGGCGGCGGgcgggGGGGGgGCGGGg -3'
miRNA:   3'- -GCGU---UUCUGCUGCC-----UCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 93559 0.71 0.786617
Target:  5'- aGCGGucGACGGCGGugcggcGGGACGCGAu- -3'
miRNA:   3'- gCGUUu-CUGCUGCCu-----CUCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 69335 0.71 0.794918
Target:  5'- gGCGAcaGCGACGGAGAcggcgacGACGCGGc- -3'
miRNA:   3'- gCGUUucUGCUGCCUCU-------CUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 24715 0.71 0.795833
Target:  5'- gGCAGGGuAUGugGGAGGGgcucuuuuACGUGAGg -3'
miRNA:   3'- gCGUUUC-UGCugCCUCUC--------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 105000 0.7 0.804897
Target:  5'- aGCGcGGGCGGCGGucGGGGCGCcAGg -3'
miRNA:   3'- gCGUuUCUGCUGCCu-CUCUGCGcUCa -5'
23612 5' -53.8 NC_005261.1 + 1116 0.7 0.804897
Target:  5'- aCGCGGAcGACGA-GGAG-GACGCgGAGg -3'
miRNA:   3'- -GCGUUU-CUGCUgCCUCuCUGCG-CUCa -5'
23612 5' -53.8 NC_005261.1 + 13687 0.7 0.813801
Target:  5'- gCGCGcGGGCGugGGgcggggcgggcuGGGGGCGgGGGUg -3'
miRNA:   3'- -GCGUuUCUGCugCC------------UCUCUGCgCUCA- -5'
23612 5' -53.8 NC_005261.1 + 33808 0.7 0.813801
Target:  5'- gGCGGgcuugucuuuGGGCGGCcGGGGGGCGCGGGc -3'
miRNA:   3'- gCGUU----------UCUGCUGcCUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 128116 0.7 0.822535
Target:  5'- gCGCGGGGuCGggccgaguGCGGAGAGAgGCGAc- -3'
miRNA:   3'- -GCGUUUCuGC--------UGCCUCUCUgCGCUca -5'
23612 5' -53.8 NC_005261.1 + 129653 0.7 0.822535
Target:  5'- gGCGgcGGCGGCGGcAGGGGCGgGAc- -3'
miRNA:   3'- gCGUuuCUGCUGCC-UCUCUGCgCUca -5'
23612 5' -53.8 NC_005261.1 + 11465 0.7 0.822535
Target:  5'- aGCGGagcGGGCG-CGGAGGGGCgggGCGGGg -3'
miRNA:   3'- gCGUU---UCUGCuGCCUCUCUG---CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 134846 0.7 0.822535
Target:  5'- uGCGAGGAgGACGGGGAcaaGGCGCc--- -3'
miRNA:   3'- gCGUUUCUgCUGCCUCU---CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 42836 0.7 0.822535
Target:  5'- aGCAccuGGGCGAUGGcAGAG-UGCGAGc -3'
miRNA:   3'- gCGUu--UCUGCUGCC-UCUCuGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 462 0.7 0.831092
Target:  5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3'
miRNA:   3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 138133 0.7 0.831092
Target:  5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3'
miRNA:   3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 30686 0.7 0.831092
Target:  5'- gGaCGGGGACgggGACGGGGAGGCccGCGGGa -3'
miRNA:   3'- gC-GUUUCUG---CUGCCUCUCUG--CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 56006 0.7 0.839463
Target:  5'- gGCGGGGGCGgggGCGGGGAaGACGCa--- -3'
miRNA:   3'- gCGUUUCUGC---UGCCUCU-CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 50636 0.7 0.839463
Target:  5'- aCGC--GGGCGGCGGGGuGGCGCcGGc -3'
miRNA:   3'- -GCGuuUCUGCUGCCUCuCUGCGcUCa -5'
23612 5' -53.8 NC_005261.1 + 134381 0.7 0.839463
Target:  5'- cCGCu--GGCGACGGcGAGA-GCGGGa -3'
miRNA:   3'- -GCGuuuCUGCUGCCuCUCUgCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.