miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 1848 0.67 0.94338
Target:  5'- gCGCGAAGGCGcCGGGcccgaAGACGCGc-- -3'
miRNA:   3'- -GCGUUUCUGCuGCCUc----UCUGCGCuca -5'
23612 5' -53.8 NC_005261.1 + 10615 0.67 0.94338
Target:  5'- aGCGAGGACGACuacGAG-GACGacuaCGAGg -3'
miRNA:   3'- gCGUUUCUGCUGc--CUCuCUGC----GCUCa -5'
23612 5' -53.8 NC_005261.1 + 119455 0.67 0.94338
Target:  5'- aCGcCGAAGgacagcACGACGGAcGAGACGCccuuGGGg -3'
miRNA:   3'- -GC-GUUUC------UGCUGCCU-CUCUGCG----CUCa -5'
23612 5' -53.8 NC_005261.1 + 20571 0.67 0.94338
Target:  5'- gCGCAgcGGCGcCGGc--GGCGCGGGUg -3'
miRNA:   3'- -GCGUuuCUGCuGCCucuCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 97823 0.67 0.94292
Target:  5'- cCGCA--GACGGCGGcaaaaacGGGGGCgGCGGGc -3'
miRNA:   3'- -GCGUuuCUGCUGCC-------UCUCUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 5321 0.67 0.938677
Target:  5'- --gGAGGGgGuaGgGGAGAGGCGCGGGUc -3'
miRNA:   3'- gcgUUUCUgC--UgCCUCUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 114330 0.67 0.933731
Target:  5'- gCGCAAGGugGACuggcucGAGcGGCGCGuGg -3'
miRNA:   3'- -GCGUUUCugCUGc-----CUCuCUGCGCuCa -5'
23612 5' -53.8 NC_005261.1 + 128594 0.67 0.933731
Target:  5'- gGCAGAGcaaGAUGGAGAGGCaccgcCGGGg -3'
miRNA:   3'- gCGUUUCug-CUGCCUCUCUGc----GCUCa -5'
23612 5' -53.8 NC_005261.1 + 134957 0.67 0.933731
Target:  5'- gGCGAGGGCGcCGGcGAcgcaGACgGCGAGg -3'
miRNA:   3'- gCGUUUCUGCuGCCuCU----CUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 136242 0.67 0.933731
Target:  5'- aGCGAGGGCagagGGCcGAGAGAaggcaCGCGAGa -3'
miRNA:   3'- gCGUUUCUG----CUGcCUCUCU-----GCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 5371 0.67 0.933731
Target:  5'- -aCGGAGACGGgGGAGGGAgG-GAGg -3'
miRNA:   3'- gcGUUUCUGCUgCCUCUCUgCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 58277 0.67 0.933731
Target:  5'- cCGCGcucacGGGGcCGGCGcgccGGGGGGCGCGGGg -3'
miRNA:   3'- -GCGU-----UUCU-GCUGC----CUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 98504 0.67 0.928539
Target:  5'- gGUAAGGugccgGCGuACGGGcAGGCGCGAGa -3'
miRNA:   3'- gCGUUUC-----UGC-UGCCUcUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 69725 0.67 0.928539
Target:  5'- aGCGAGGAgGAagaGGAgGAGGCG-GAGg -3'
miRNA:   3'- gCGUUUCUgCUg--CCU-CUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 5865 0.67 0.923103
Target:  5'- gGUcucGACGACGGAGAGAgGCuGGc -3'
miRNA:   3'- gCGuuuCUGCUGCCUCUCUgCGcUCa -5'
23612 5' -53.8 NC_005261.1 + 72447 0.67 0.923103
Target:  5'- gGCGGGGGCGcccGCGGcGAGcgcggcgaGCGCGAGc -3'
miRNA:   3'- gCGUUUCUGC---UGCCuCUC--------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 62896 0.67 0.923103
Target:  5'- gCGCGAGGcGgGGCGGGGcGGACGCGc-- -3'
miRNA:   3'- -GCGUUUC-UgCUGCCUC-UCUGCGCuca -5'
23612 5' -53.8 NC_005261.1 + 8844 0.67 0.923103
Target:  5'- gGCGGGGAcaggcCGugGGAGGGgccucccucuuACGUGAGg -3'
miRNA:   3'- gCGUUUCU-----GCugCCUCUC-----------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 26877 0.67 0.923103
Target:  5'- gGCgGGGGugGGUGGGGGGGgGCGGGg -3'
miRNA:   3'- gCG-UUUCugCUGCCUCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 5545 0.68 0.919723
Target:  5'- gCGCAgcGAGACGgggggcgcccgagcgGCGGAGAugggGGCGcCGAGg -3'
miRNA:   3'- -GCGU--UUCUGC---------------UGCCUCU----CUGC-GCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.