Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23612 | 5' | -53.8 | NC_005261.1 | + | 27725 | 0.68 | 0.917421 |
Target: 5'- cCGC-GGGAgGAgCGGAGAcGCGCGGGc -3' miRNA: 3'- -GCGuUUCUgCU-GCCUCUcUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 56111 | 0.68 | 0.913895 |
Target: 5'- gCGCGAGcGGCGggagcgcgccgcaggGCGG-GGGGCGCGGGc -3' miRNA: 3'- -GCGUUU-CUGC---------------UGCCuCUCUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 113398 | 0.68 | 0.911495 |
Target: 5'- uCGCAGG--UGACGGAG-GGCaGCGAGg -3' miRNA: 3'- -GCGUUUcuGCUGCCUCuCUG-CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 87106 | 0.68 | 0.911495 |
Target: 5'- gCGCAGAGcGCGGCGuuguagaAGGGcCGCGGGUa -3' miRNA: 3'- -GCGUUUC-UGCUGCc------UCUCuGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 36346 | 0.68 | 0.911495 |
Target: 5'- aGCAGAGACugccGCGGAGGGGggaGCGGa- -3' miRNA: 3'- gCGUUUCUGc---UGCCUCUCUg--CGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 137037 | 0.68 | 0.907823 |
Target: 5'- gGCGucgguGGAgGGCGGAccgucggcaggcgcgGAGGCGCGGGc -3' miRNA: 3'- gCGUu----UCUgCUGCCU---------------CUCUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 100656 | 0.68 | 0.905327 |
Target: 5'- cCGCAAcGGCGcgcgucGCGGGGuucgcGCGCGAGUg -3' miRNA: 3'- -GCGUUuCUGC------UGCCUCuc---UGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 28009 | 0.68 | 0.905327 |
Target: 5'- cCGCGAaaggGGGcCGGCGGGGAGGagaGgGAGg -3' miRNA: 3'- -GCGUU----UCU-GCUGCCUCUCUg--CgCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 22103 | 0.68 | 0.905327 |
Target: 5'- gCGgGAGGGCGguguGCGGAGAGuGCGUGcGGUa -3' miRNA: 3'- -GCgUUUCUGC----UGCCUCUC-UGCGC-UCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 39267 | 0.68 | 0.905327 |
Target: 5'- aGCGAGGuCuuCGGGGAGGCcCGGGUg -3' miRNA: 3'- gCGUUUCuGcuGCCUCUCUGcGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 98670 | 0.68 | 0.904697 |
Target: 5'- gGCGAGGGCGGgcuccgcCGGggccGGAGGCGCGGc- -3' miRNA: 3'- gCGUUUCUGCU-------GCC----UCUCUGCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 50594 | 0.68 | 0.898918 |
Target: 5'- aGCGGGGAgGGCaGGGAGACGgGGc- -3' miRNA: 3'- gCGUUUCUgCUGcCUCUCUGCgCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 12423 | 0.68 | 0.892271 |
Target: 5'- -cCAGGGGCGGCGGAGGGcuUGCGGcGUc -3' miRNA: 3'- gcGUUUCUGCUGCCUCUCu-GCGCU-CA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 135091 | 0.68 | 0.88539 |
Target: 5'- uCGCGGcccGGCGGCGGA---GCGCGAGg -3' miRNA: 3'- -GCGUUu--CUGCUGCCUcucUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 87880 | 0.68 | 0.88539 |
Target: 5'- gGCGgagaGAGGCG-CGGAGAGG-GCGGGc -3' miRNA: 3'- gCGU----UUCUGCuGCCUCUCUgCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 55209 | 0.68 | 0.88539 |
Target: 5'- gCGCGGAucCGGCGGcccGAGGCgGCGAGg -3' miRNA: 3'- -GCGUUUcuGCUGCCu--CUCUG-CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 103863 | 0.69 | 0.878279 |
Target: 5'- cCGCGgcGGCGGCGGGGcGGCGCc--- -3' miRNA: 3'- -GCGUuuCUGCUGCCUCuCUGCGcuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 47886 | 0.69 | 0.878279 |
Target: 5'- cCGgGGAG-CGGCGGcGGcGGCGCGAGg -3' miRNA: 3'- -GCgUUUCuGCUGCCuCU-CUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 43772 | 0.69 | 0.878279 |
Target: 5'- uGCucguGGGGCGgcgcGCGGAGGGcgcCGCGGGUg -3' miRNA: 3'- gCGu---UUCUGC----UGCCUCUCu--GCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 11078 | 0.69 | 0.878279 |
Target: 5'- gCGCGucuaGGGACggGACGGGGcgGGACGCGAc- -3' miRNA: 3'- -GCGU----UUCUG--CUGCCUC--UCUGCGCUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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