miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 27725 0.68 0.917421
Target:  5'- cCGC-GGGAgGAgCGGAGAcGCGCGGGc -3'
miRNA:   3'- -GCGuUUCUgCU-GCCUCUcUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 56111 0.68 0.913895
Target:  5'- gCGCGAGcGGCGggagcgcgccgcaggGCGG-GGGGCGCGGGc -3'
miRNA:   3'- -GCGUUU-CUGC---------------UGCCuCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 113398 0.68 0.911495
Target:  5'- uCGCAGG--UGACGGAG-GGCaGCGAGg -3'
miRNA:   3'- -GCGUUUcuGCUGCCUCuCUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 87106 0.68 0.911495
Target:  5'- gCGCAGAGcGCGGCGuuguagaAGGGcCGCGGGUa -3'
miRNA:   3'- -GCGUUUC-UGCUGCc------UCUCuGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 36346 0.68 0.911495
Target:  5'- aGCAGAGACugccGCGGAGGGGggaGCGGa- -3'
miRNA:   3'- gCGUUUCUGc---UGCCUCUCUg--CGCUca -5'
23612 5' -53.8 NC_005261.1 + 137037 0.68 0.907823
Target:  5'- gGCGucgguGGAgGGCGGAccgucggcaggcgcgGAGGCGCGGGc -3'
miRNA:   3'- gCGUu----UCUgCUGCCU---------------CUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 100656 0.68 0.905327
Target:  5'- cCGCAAcGGCGcgcgucGCGGGGuucgcGCGCGAGUg -3'
miRNA:   3'- -GCGUUuCUGC------UGCCUCuc---UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 28009 0.68 0.905327
Target:  5'- cCGCGAaaggGGGcCGGCGGGGAGGagaGgGAGg -3'
miRNA:   3'- -GCGUU----UCU-GCUGCCUCUCUg--CgCUCa -5'
23612 5' -53.8 NC_005261.1 + 22103 0.68 0.905327
Target:  5'- gCGgGAGGGCGguguGCGGAGAGuGCGUGcGGUa -3'
miRNA:   3'- -GCgUUUCUGC----UGCCUCUC-UGCGC-UCA- -5'
23612 5' -53.8 NC_005261.1 + 39267 0.68 0.905327
Target:  5'- aGCGAGGuCuuCGGGGAGGCcCGGGUg -3'
miRNA:   3'- gCGUUUCuGcuGCCUCUCUGcGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 98670 0.68 0.904697
Target:  5'- gGCGAGGGCGGgcuccgcCGGggccGGAGGCGCGGc- -3'
miRNA:   3'- gCGUUUCUGCU-------GCC----UCUCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 50594 0.68 0.898918
Target:  5'- aGCGGGGAgGGCaGGGAGACGgGGc- -3'
miRNA:   3'- gCGUUUCUgCUGcCUCUCUGCgCUca -5'
23612 5' -53.8 NC_005261.1 + 12423 0.68 0.892271
Target:  5'- -cCAGGGGCGGCGGAGGGcuUGCGGcGUc -3'
miRNA:   3'- gcGUUUCUGCUGCCUCUCu-GCGCU-CA- -5'
23612 5' -53.8 NC_005261.1 + 55209 0.68 0.88539
Target:  5'- gCGCGGAucCGGCGGcccGAGGCgGCGAGg -3'
miRNA:   3'- -GCGUUUcuGCUGCCu--CUCUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 87880 0.68 0.88539
Target:  5'- gGCGgagaGAGGCG-CGGAGAGG-GCGGGc -3'
miRNA:   3'- gCGU----UUCUGCuGCCUCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 135091 0.68 0.88539
Target:  5'- uCGCGGcccGGCGGCGGA---GCGCGAGg -3'
miRNA:   3'- -GCGUUu--CUGCUGCCUcucUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 47886 0.69 0.878279
Target:  5'- cCGgGGAG-CGGCGGcGGcGGCGCGAGg -3'
miRNA:   3'- -GCgUUUCuGCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 43772 0.69 0.878279
Target:  5'- uGCucguGGGGCGgcgcGCGGAGGGcgcCGCGGGUg -3'
miRNA:   3'- gCGu---UUCUGC----UGCCUCUCu--GCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 11078 0.69 0.878279
Target:  5'- gCGCGucuaGGGACggGACGGGGcgGGACGCGAc- -3'
miRNA:   3'- -GCGU----UUCUG--CUGCCUC--UCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 7977 0.69 0.878279
Target:  5'- uCGCcGAGGCGGCccggugGGAGAGGgGgGAGa -3'
miRNA:   3'- -GCGuUUCUGCUG------CCUCUCUgCgCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.