miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 138133 0.7 0.831092
Target:  5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3'
miRNA:   3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 137037 0.68 0.907823
Target:  5'- gGCGucgguGGAgGGCGGAccgucggcaggcgcgGAGGCGCGGGc -3'
miRNA:   3'- gCGUu----UCUgCUGCCU---------------CUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 136242 0.67 0.933731
Target:  5'- aGCGAGGGCagagGGCcGAGAGAaggcaCGCGAGa -3'
miRNA:   3'- gCGUUUCUG----CUGcCUCUCU-----GCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 135091 0.68 0.88539
Target:  5'- uCGCGGcccGGCGGCGGA---GCGCGAGg -3'
miRNA:   3'- -GCGUUu--CUGCUGCCUcucUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 134957 0.67 0.933731
Target:  5'- gGCGAGGGCGcCGGcGAcgcaGACgGCGAGg -3'
miRNA:   3'- gCGUUUCUGCuGCCuCU----CUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 134846 0.7 0.822535
Target:  5'- uGCGAGGAgGACGGGGAcaaGGCGCc--- -3'
miRNA:   3'- gCGUUUCUgCUGCCUCU---CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 134381 0.7 0.839463
Target:  5'- cCGCu--GGCGACGGcGAGA-GCGGGa -3'
miRNA:   3'- -GCGuuuCUGCUGCCuCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 129653 0.7 0.822535
Target:  5'- gGCGgcGGCGGCGGcAGGGGCGgGAc- -3'
miRNA:   3'- gCGUuuCUGCUGCC-UCUCUGCgCUca -5'
23612 5' -53.8 NC_005261.1 + 128594 0.67 0.933731
Target:  5'- gGCAGAGcaaGAUGGAGAGGCaccgcCGGGg -3'
miRNA:   3'- gCGUUUCug-CUGCCUCUCUGc----GCUCa -5'
23612 5' -53.8 NC_005261.1 + 128116 0.7 0.822535
Target:  5'- gCGCGGGGuCGggccgaguGCGGAGAGAgGCGAc- -3'
miRNA:   3'- -GCGUUUCuGC--------UGCCUCUCUgCGCUca -5'
23612 5' -53.8 NC_005261.1 + 127643 0.73 0.657283
Target:  5'- gGCGgcGGCGcCGGGGGGcGCGCGGGUu -3'
miRNA:   3'- gCGUuuCUGCuGCCUCUC-UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 121429 0.66 0.95758
Target:  5'- cCGCuacGGGGCGGCGGGGcGGGCauggggccgucgaugGCGAGc -3'
miRNA:   3'- -GCGu--UUCUGCUGCCUC-UCUG---------------CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 121126 0.76 0.514096
Target:  5'- gCGCGGAGGCG-CGGGcgcGAG-CGCGAGUa -3'
miRNA:   3'- -GCGUUUCUGCuGCCU---CUCuGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 119455 0.67 0.94338
Target:  5'- aCGcCGAAGgacagcACGACGGAcGAGACGCccuuGGGg -3'
miRNA:   3'- -GC-GUUUC------UGCUGCCU-CUCUGCG----CUCa -5'
23612 5' -53.8 NC_005261.1 + 117762 0.66 0.961243
Target:  5'- aCGCGAcucggguccggaucgGGGCGGggaGGAGGGAgGCGAa- -3'
miRNA:   3'- -GCGUU---------------UCUGCUg--CCUCUCUgCGCUca -5'
23612 5' -53.8 NC_005261.1 + 114330 0.67 0.933731
Target:  5'- gCGCAAGGugGACuggcucGAGcGGCGCGuGg -3'
miRNA:   3'- -GCGUUUCugCUGc-----CUCuCUGCGCuCa -5'
23612 5' -53.8 NC_005261.1 + 113398 0.68 0.911495
Target:  5'- uCGCAGG--UGACGGAG-GGCaGCGAGg -3'
miRNA:   3'- -GCGUUUcuGCUGCCUCuCUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 112656 0.66 0.95605
Target:  5'- uCGCAgccGAGuACGAgCGGcuGGAG-CGCGAGg -3'
miRNA:   3'- -GCGU---UUC-UGCU-GCC--UCUCuGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 110790 0.69 0.870943
Target:  5'- uGCuccgGGGGACGGCGGgcgaGGAGGCGgGGGc -3'
miRNA:   3'- gCG----UUUCUGCUGCC----UCUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 108878 0.66 0.950821
Target:  5'- aGCGGguGGACGACGGccgcgcugcccgccGGcgagcgGGGCGCGGGg -3'
miRNA:   3'- gCGUU--UCUGCUGCC--------------UC------UCUGCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.