Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23612 | 5' | -53.8 | NC_005261.1 | + | 138133 | 0.7 | 0.831092 |
Target: 5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3' miRNA: 3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 137037 | 0.68 | 0.907823 |
Target: 5'- gGCGucgguGGAgGGCGGAccgucggcaggcgcgGAGGCGCGGGc -3' miRNA: 3'- gCGUu----UCUgCUGCCU---------------CUCUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 136242 | 0.67 | 0.933731 |
Target: 5'- aGCGAGGGCagagGGCcGAGAGAaggcaCGCGAGa -3' miRNA: 3'- gCGUUUCUG----CUGcCUCUCU-----GCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 135091 | 0.68 | 0.88539 |
Target: 5'- uCGCGGcccGGCGGCGGA---GCGCGAGg -3' miRNA: 3'- -GCGUUu--CUGCUGCCUcucUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 134957 | 0.67 | 0.933731 |
Target: 5'- gGCGAGGGCGcCGGcGAcgcaGACgGCGAGg -3' miRNA: 3'- gCGUUUCUGCuGCCuCU----CUG-CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 134846 | 0.7 | 0.822535 |
Target: 5'- uGCGAGGAgGACGGGGAcaaGGCGCc--- -3' miRNA: 3'- gCGUUUCUgCUGCCUCU---CUGCGcuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 134381 | 0.7 | 0.839463 |
Target: 5'- cCGCu--GGCGACGGcGAGA-GCGGGa -3' miRNA: 3'- -GCGuuuCUGCUGCCuCUCUgCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 129653 | 0.7 | 0.822535 |
Target: 5'- gGCGgcGGCGGCGGcAGGGGCGgGAc- -3' miRNA: 3'- gCGUuuCUGCUGCC-UCUCUGCgCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 128594 | 0.67 | 0.933731 |
Target: 5'- gGCAGAGcaaGAUGGAGAGGCaccgcCGGGg -3' miRNA: 3'- gCGUUUCug-CUGCCUCUCUGc----GCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 128116 | 0.7 | 0.822535 |
Target: 5'- gCGCGGGGuCGggccgaguGCGGAGAGAgGCGAc- -3' miRNA: 3'- -GCGUUUCuGC--------UGCCUCUCUgCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 127643 | 0.73 | 0.657283 |
Target: 5'- gGCGgcGGCGcCGGGGGGcGCGCGGGUu -3' miRNA: 3'- gCGUuuCUGCuGCCUCUC-UGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 121429 | 0.66 | 0.95758 |
Target: 5'- cCGCuacGGGGCGGCGGGGcGGGCauggggccgucgaugGCGAGc -3' miRNA: 3'- -GCGu--UUCUGCUGCCUC-UCUG---------------CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 121126 | 0.76 | 0.514096 |
Target: 5'- gCGCGGAGGCG-CGGGcgcGAG-CGCGAGUa -3' miRNA: 3'- -GCGUUUCUGCuGCCU---CUCuGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 119455 | 0.67 | 0.94338 |
Target: 5'- aCGcCGAAGgacagcACGACGGAcGAGACGCccuuGGGg -3' miRNA: 3'- -GC-GUUUC------UGCUGCCU-CUCUGCG----CUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 117762 | 0.66 | 0.961243 |
Target: 5'- aCGCGAcucggguccggaucgGGGCGGggaGGAGGGAgGCGAa- -3' miRNA: 3'- -GCGUU---------------UCUGCUg--CCUCUCUgCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 114330 | 0.67 | 0.933731 |
Target: 5'- gCGCAAGGugGACuggcucGAGcGGCGCGuGg -3' miRNA: 3'- -GCGUUUCugCUGc-----CUCuCUGCGCuCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 113398 | 0.68 | 0.911495 |
Target: 5'- uCGCAGG--UGACGGAG-GGCaGCGAGg -3' miRNA: 3'- -GCGUUUcuGCUGCCUCuCUG-CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 112656 | 0.66 | 0.95605 |
Target: 5'- uCGCAgccGAGuACGAgCGGcuGGAG-CGCGAGg -3' miRNA: 3'- -GCGU---UUC-UGCU-GCC--UCUCuGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 110790 | 0.69 | 0.870943 |
Target: 5'- uGCuccgGGGGACGGCGGgcgaGGAGGCGgGGGc -3' miRNA: 3'- gCG----UUUCUGCUGCC----UCUCUGCgCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 108878 | 0.66 | 0.950821 |
Target: 5'- aGCGGguGGACGACGGccgcgcugcccgccGGcgagcgGGGCGCGGGg -3' miRNA: 3'- gCGUU--UCUGCUGCC--------------UC------UCUGCGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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