miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 47921 0.75 0.272944
Target:  5'- cCGCGCGGcCGUCaCGUCCcgcgcGCCgCGCGCg -3'
miRNA:   3'- -GCGCGUC-GUAGaGCAGG-----CGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 105977 0.75 0.272944
Target:  5'- aGCGCGGCGUCgaCG-CCGCC-CGCGa -3'
miRNA:   3'- gCGCGUCGUAGa-GCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 131693 0.75 0.279304
Target:  5'- gCGCGCGGCG-CUgGaCCGCCUCGagaGCc -3'
miRNA:   3'- -GCGCGUCGUaGAgCaGGCGGAGCg--CG- -5'
23616 5' -59.5 NC_005261.1 + 99235 0.75 0.292377
Target:  5'- gCGCGuCGGCGUCgCGcCCGCCgggcCGCGUa -3'
miRNA:   3'- -GCGC-GUCGUAGaGCaGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 92204 0.74 0.298414
Target:  5'- gGCGCAGCcgccgaagccggcGUCgUCGgccCCGCCgagCGCGCg -3'
miRNA:   3'- gCGCGUCG-------------UAG-AGCa--GGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133361 0.74 0.299091
Target:  5'- cCGCGCAGgGcUUCGgCUGCCUgCGCGCg -3'
miRNA:   3'- -GCGCGUCgUaGAGCaGGCGGA-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102913 0.74 0.299091
Target:  5'- -cCGCAGCGcCUcCG-CCGCUUCGCGCa -3'
miRNA:   3'- gcGCGUCGUaGA-GCaGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 3513 0.74 0.312874
Target:  5'- aGCGCGGCcgCcuccagcgCGgcggCCGCCUCgGCGCg -3'
miRNA:   3'- gCGCGUCGuaGa-------GCa---GGCGGAG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 84939 0.74 0.312874
Target:  5'- uCGCGCAGCAccucCUCGgcggCCGCCgaggcgUCGgGCg -3'
miRNA:   3'- -GCGCGUCGUa---GAGCa---GGCGG------AGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 85839 0.74 0.312874
Target:  5'- gCGUGUGGUuggcCUCGUagagCGCCUCGCGCa -3'
miRNA:   3'- -GCGCGUCGua--GAGCAg---GCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 61084 0.74 0.312874
Target:  5'- gGCGCucacgGGCAgCUCGgCCGCCgagaUCGCGCg -3'
miRNA:   3'- gCGCG-----UCGUaGAGCaGGCGG----AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 93075 0.74 0.317811
Target:  5'- aCGCGC-GCcuuauauagauccagCUCGUCCGCaUCGCGCg -3'
miRNA:   3'- -GCGCGuCGua-------------GAGCAGGCGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 132361 0.74 0.319945
Target:  5'- cCGcCGCGGCGcgCUCG-CCGCgCUCGCGg -3'
miRNA:   3'- -GC-GCGUCGUa-GAGCaGGCG-GAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 72992 0.74 0.319945
Target:  5'- aGCGCGGCcagcgcGUCcgCGUCCGCCcaccccaGCGCg -3'
miRNA:   3'- gCGCGUCG------UAGa-GCAGGCGGag-----CGCG- -5'
23616 5' -59.5 NC_005261.1 + 104546 0.74 0.319945
Target:  5'- gGCGCAGCuuggCGUCCGCCagGuCGCc -3'
miRNA:   3'- gCGCGUCGuagaGCAGGCGGagC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 117230 0.74 0.324965
Target:  5'- gGCGCcgAGUccgccucgggucggGUCUCGUUCGCCgCGCGCc -3'
miRNA:   3'- gCGCG--UCG--------------UAGAGCAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 84318 0.74 0.327135
Target:  5'- gGCGUAggucGCGUC-CGgggCCGCgCUCGCGCa -3'
miRNA:   3'- gCGCGU----CGUAGaGCa--GGCG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 46520 0.74 0.327135
Target:  5'- uCGCGCAGCA-C-CGccUCCGCUgCGCGCu -3'
miRNA:   3'- -GCGCGUCGUaGaGC--AGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 118577 0.74 0.334443
Target:  5'- gCGCGCGGCGgcgCGcgCCGCCgccgcggagcUCGCGCu -3'
miRNA:   3'- -GCGCGUCGUagaGCa-GGCGG----------AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 91488 0.74 0.334443
Target:  5'- cCGcCGCGGCcgC-CGcCCGCCcCGCGCg -3'
miRNA:   3'- -GC-GCGUCGuaGaGCaGGCGGaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.