Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 812 | 0.66 | 0.715642 |
Target: 5'- gCCCGGCGCggacaaaAUGCcGCAgccuguuaaccuGACUGUUCg -3' miRNA: 3'- aGGGCCGUGg------UACGuUGU------------UUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 3380 | 0.66 | 0.693625 |
Target: 5'- gUCCGGaaaaGCC--GCGACGAACUGguauCCCa -3' miRNA: 3'- aGGGCCg---UGGuaCGUUGUUUGAC----GGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 3887 | 0.68 | 0.570506 |
Target: 5'- aCCCGGCAUCAggUGCggUAcuuUUGCgCCu -3' miRNA: 3'- aGGGCCGUGGU--ACGuuGUuu-GACG-GG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 3975 | 0.75 | 0.245119 |
Target: 5'- gCCCGGCAgCGauauaccGCAGCAguGACUGCUCa -3' miRNA: 3'- aGGGCCGUgGUa------CGUUGU--UUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 4311 | 0.69 | 0.504097 |
Target: 5'- gUCCGugaaacgauggaGCGCCGUGCAGCcggucuuAAACcGCCCg -3' miRNA: 3'- aGGGC------------CGUGGUACGUUG-------UUUGaCGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 4547 | 0.7 | 0.473696 |
Target: 5'- aUgCGGUGUCcgGCGACAgccuGACUGCCCa -3' miRNA: 3'- aGgGCCGUGGuaCGUUGU----UUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 4610 | 0.67 | 0.637699 |
Target: 5'- gUCgCCGGaCACC--GCAuccGCAGGCUGCUg -3' miRNA: 3'- -AG-GGCC-GUGGuaCGU---UGUUUGACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 4736 | 0.73 | 0.309435 |
Target: 5'- --aCGGCAUUAucgcccgucUGCAACAGGCUGCCa -3' miRNA: 3'- aggGCCGUGGU---------ACGUUGUUUGACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 4938 | 0.68 | 0.581627 |
Target: 5'- cUCCCGGCGuCUG-GUcacGCAGACcGCCCg -3' miRNA: 3'- -AGGGCCGU-GGUaCGu--UGUUUGaCGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 5561 | 0.69 | 0.505161 |
Target: 5'- cCCCGGUaugACCGUGa---AAACgGCCCg -3' miRNA: 3'- aGGGCCG---UGGUACguugUUUGaCGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 5663 | 0.66 | 0.715643 |
Target: 5'- -aCCGGCACCGcuggcUGCAGguAACccggcaucugaUGCCg -3' miRNA: 3'- agGGCCGUGGU-----ACGUUguUUG-----------ACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 7573 | 0.66 | 0.726528 |
Target: 5'- uUCCCGGCAgCAcaaaUGCcACAggUUcauCCCg -3' miRNA: 3'- -AGGGCCGUgGU----ACGuUGUuuGAc--GGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 9037 | 0.67 | 0.634326 |
Target: 5'- gUCCCGGCACCuuucaccgGCAuuguaggauuugguACAGGCauagcGUCCu -3' miRNA: 3'- -AGGGCCGUGGua------CGU--------------UGUUUGa----CGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 9206 | 0.67 | 0.6377 |
Target: 5'- gCCCGGagaGCagggGCAGCAGgcGCUGCUg -3' miRNA: 3'- aGGGCCg--UGgua-CGUUGUU--UGACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 9482 | 0.67 | 0.660163 |
Target: 5'- -gCCGGUugccgcuguuACCGUGCuGCGAucuuCUGCCa -3' miRNA: 3'- agGGCCG----------UGGUACGuUGUUu---GACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 9544 | 0.67 | 0.671359 |
Target: 5'- gCCaCGGuCAgCGUGguGCu--CUGCCCu -3' miRNA: 3'- aGG-GCC-GUgGUACguUGuuuGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 10343 | 0.67 | 0.648939 |
Target: 5'- -aCCGGCGCgAgGCuGACGAAgaGCCUg -3' miRNA: 3'- agGGCCGUGgUaCG-UUGUUUgaCGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 10943 | 0.69 | 0.51585 |
Target: 5'- gCCUGGUAUCAggGCAACucaaccCUGUCCg -3' miRNA: 3'- aGGGCCGUGGUa-CGUUGuuu---GACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 11101 | 0.68 | 0.615215 |
Target: 5'- gCCCGGCucuggacaggACCA-GCAuACGAuCUGCCg -3' miRNA: 3'- aGGGCCG----------UGGUaCGU-UGUUuGACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 11312 | 0.66 | 0.737316 |
Target: 5'- gUUCCGGCgaugaaGCCGgggcauugcagGCGGCGAACgagGCCg -3' miRNA: 3'- -AGGGCCG------UGGUa----------CGUUGUUUGa--CGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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