miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2362 5' -54.3 NC_001416.1 + 4547 0.7 0.473696
Target:  5'- aUgCGGUGUCcgGCGACAgccuGACUGCCCa -3'
miRNA:   3'- aGgGCCGUGGuaCGUUGU----UUGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 17229 0.66 0.709069
Target:  5'- --aCGGCacguaugccaucaccGCCGUGCAGC-AugUGCCg -3'
miRNA:   3'- aggGCCG---------------UGGUACGUUGuUugACGGg -5'
2362 5' -54.3 NC_001416.1 + 20020 0.67 0.648939
Target:  5'- -gCCGGCgauGCCAgUGCAuC-AGCUGCUCa -3'
miRNA:   3'- agGGCCG---UGGU-ACGUuGuUUGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 9206 0.67 0.6377
Target:  5'- gCCCGGagaGCagggGCAGCAGgcGCUGCUg -3'
miRNA:   3'- aGGGCCg--UGgua-CGUUGUU--UGACGGg -5'
2362 5' -54.3 NC_001416.1 + 4938 0.68 0.581627
Target:  5'- cUCCCGGCGuCUG-GUcacGCAGACcGCCCg -3'
miRNA:   3'- -AGGGCCGU-GGUaCGu--UGUUUGaCGGG- -5'
2362 5' -54.3 NC_001416.1 + 46537 0.69 0.51585
Target:  5'- aUUuuGGCugCAU-CGACAGuuuucuuCUGCCCa -3'
miRNA:   3'- -AGggCCGugGUAcGUUGUUu------GACGGG- -5'
2362 5' -54.3 NC_001416.1 + 5663 0.66 0.715643
Target:  5'- -aCCGGCACCGcuggcUGCAGguAACccggcaucugaUGCCg -3'
miRNA:   3'- agGGCCGUGGU-----ACGUUguUUG-----------ACGGg -5'
2362 5' -54.3 NC_001416.1 + 13816 0.67 0.660163
Target:  5'- -gCUGGCGCauugagcaGUGCAGCGAACUGagCg -3'
miRNA:   3'- agGGCCGUGg-------UACGUUGUUUGACggG- -5'
2362 5' -54.3 NC_001416.1 + 31962 0.68 0.608478
Target:  5'- aUCCCGGUACgcUGCAGgauaauguccgguguCAuGCUGCCa -3'
miRNA:   3'- -AGGGCCGUGguACGUU---------------GUuUGACGGg -5'
2362 5' -54.3 NC_001416.1 + 10943 0.69 0.51585
Target:  5'- gCCUGGUAUCAggGCAACucaaccCUGUCCg -3'
miRNA:   3'- aGGGCCGUGGUa-CGUUGuuu---GACGGG- -5'
2362 5' -54.3 NC_001416.1 + 4311 0.69 0.504097
Target:  5'- gUCCGugaaacgauggaGCGCCGUGCAGCcggucuuAAACcGCCCg -3'
miRNA:   3'- aGGGC------------CGUGGUACGUUG-------UUUGaCGGG- -5'
2362 5' -54.3 NC_001416.1 + 20412 0.66 0.726529
Target:  5'- uUCCuCGGCAacg-GCGGCAGAaaauuCUGCCa -3'
miRNA:   3'- -AGG-GCCGUgguaCGUUGUUU-----GACGGg -5'
2362 5' -54.3 NC_001416.1 + 5561 0.69 0.505161
Target:  5'- cCCCGGUaugACCGUGa---AAACgGCCCg -3'
miRNA:   3'- aGGGCCG---UGGUACguugUUUGaCGGG- -5'
2362 5' -54.3 NC_001416.1 + 10343 0.67 0.648939
Target:  5'- -aCCGGCGCgAgGCuGACGAAgaGCCUg -3'
miRNA:   3'- agGGCCGUGgUaCG-UUGUUUgaCGGG- -5'
2362 5' -54.3 NC_001416.1 + 11312 0.66 0.737316
Target:  5'- gUUCCGGCgaugaaGCCGgggcauugcagGCGGCGAACgagGCCg -3'
miRNA:   3'- -AGGGCCG------UGGUa----------CGUUGUUUGa--CGGg -5'
2362 5' -54.3 NC_001416.1 + 4736 0.73 0.309435
Target:  5'- --aCGGCAUUAucgcccgucUGCAACAGGCUGCCa -3'
miRNA:   3'- aggGCCGUGGU---------ACGUUGUUUGACGGg -5'
2362 5' -54.3 NC_001416.1 + 12546 0.71 0.443245
Target:  5'- gCgUGGCugCAcuuuuuaccUGCGACAuACUGUCCg -3'
miRNA:   3'- aGgGCCGugGU---------ACGUUGUuUGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 13538 0.69 0.526629
Target:  5'- uUCCCaGaGCACCAcGCuGGCcGACUGCuCCg -3'
miRNA:   3'- -AGGG-C-CGUGGUaCG-UUGuUUGACG-GG- -5'
2362 5' -54.3 NC_001416.1 + 3887 0.68 0.570506
Target:  5'- aCCCGGCAUCAggUGCggUAcuuUUGCgCCu -3'
miRNA:   3'- aGGGCCGUGGU--ACGuuGUuu-GACG-GG- -5'
2362 5' -54.3 NC_001416.1 + 11101 0.68 0.615215
Target:  5'- gCCCGGCucuggacaggACCA-GCAuACGAuCUGCCg -3'
miRNA:   3'- aGGGCCG----------UGGUaCGU-UGUUuGACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.