Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 16279 | 0.66 | 0.737316 |
Target: 5'- uUCgaCGGCACC-UGCAGaauAC-GCCCg -3' miRNA: 3'- -AGg-GCCGUGGuACGUUguuUGaCGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 3887 | 0.68 | 0.570506 |
Target: 5'- aCCCGGCAUCAggUGCggUAcuuUUGCgCCu -3' miRNA: 3'- aGGGCCGUGGU--ACGuuGUuu-GACG-GG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 13538 | 0.69 | 0.526629 |
Target: 5'- uUCCCaGaGCACCAcGCuGGCcGACUGCuCCg -3' miRNA: 3'- -AGGG-C-CGUGGUaCG-UUGuUUGACG-GG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 12546 | 0.71 | 0.443245 |
Target: 5'- gCgUGGCugCAcuuuuuaccUGCGACAuACUGUCCg -3' miRNA: 3'- aGgGCCGugGU---------ACGUUGUuUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 16880 | 0.71 | 0.433342 |
Target: 5'- gCCCGGCGCgGUGUgc----CUGCCCc -3' miRNA: 3'- aGGGCCGUGgUACGuuguuuGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 45881 | 0.71 | 0.403482 |
Target: 5'- gCCCGGCAgugaagcCCAgauauugcUGCAACGgucGAUUGCCUg -3' miRNA: 3'- aGGGCCGU-------GGU--------ACGUUGU---UUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 3975 | 0.75 | 0.245119 |
Target: 5'- gCCCGGCAgCGauauaccGCAGCAguGACUGCUCa -3' miRNA: 3'- aGGGCCGUgGUa------CGUUGU--UUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 12975 | 0.79 | 0.129954 |
Target: 5'- gUCCCGGaCGCC-UGCGACcGGCUGUCUg -3' miRNA: 3'- -AGGGCC-GUGGuACGUUGuUUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 39925 | 1.13 | 0.000487 |
Target: 5'- uUCCCGGCACCAUGCAACAAACUGCCCg -3' miRNA: 3'- -AGGGCCGUGGUACGUUGUUUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 11101 | 0.68 | 0.615215 |
Target: 5'- gCCCGGCucuggacaggACCA-GCAuACGAuCUGCCg -3' miRNA: 3'- aGGGCCG----------UGGUaCGU-UGUUuGACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 18958 | 0.67 | 0.623081 |
Target: 5'- uUCCCGGacgaACCucUGUAACAcACucagaccacgcugaUGCCCa -3' miRNA: 3'- -AGGGCCg---UGGu-ACGUUGUuUG--------------ACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 9037 | 0.67 | 0.634326 |
Target: 5'- gUCCCGGCACCuuucaccgGCAuuguaggauuugguACAGGCauagcGUCCu -3' miRNA: 3'- -AGGGCCGUGGua------CGU--------------UGUUUGa----CGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 7573 | 0.66 | 0.726528 |
Target: 5'- uUCCCGGCAgCAcaaaUGCcACAggUUcauCCCg -3' miRNA: 3'- -AGGGCCGUgGU----ACGuUGUuuGAc--GGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 32243 | 0.66 | 0.720008 |
Target: 5'- cUCCGGUuaacgaugaaACCAUGCAGgAGAUUaacacucugcugaucGCCCu -3' miRNA: 3'- aGGGCCG----------UGGUACGUUgUUUGA---------------CGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 812 | 0.66 | 0.715642 |
Target: 5'- gCCCGGCGCggacaaaAUGCcGCAgccuguuaaccuGACUGUUCg -3' miRNA: 3'- aGGGCCGUGg------UACGuUGU------------UUGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 3380 | 0.66 | 0.693625 |
Target: 5'- gUCCGGaaaaGCC--GCGACGAACUGguauCCCa -3' miRNA: 3'- aGGGCCg---UGGuaCGUUGUUUGAC----GGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 9544 | 0.67 | 0.671359 |
Target: 5'- gCCaCGGuCAgCGUGguGCu--CUGCCCu -3' miRNA: 3'- aGG-GCC-GUgGUACguUGuuuGACGGG- -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 9482 | 0.67 | 0.660163 |
Target: 5'- -gCCGGUugccgcuguuACCGUGCuGCGAucuuCUGCCa -3' miRNA: 3'- agGGCCG----------UGGUACGuUGUUu---GACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 4610 | 0.67 | 0.637699 |
Target: 5'- gUCgCCGGaCACC--GCAuccGCAGGCUGCUg -3' miRNA: 3'- -AG-GGCC-GUGGuaCGU---UGUUUGACGGg -5' |
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2362 | 5' | -54.3 | NC_001416.1 | + | 21825 | 0.67 | 0.636575 |
Target: 5'- -aCCGGCACuCAcgGCuguaccgGACAAugagugacugugGCUGCCCu -3' miRNA: 3'- agGGCCGUG-GUa-CG-------UUGUU------------UGACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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