miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2362 5' -54.3 NC_001416.1 + 32243 0.66 0.720008
Target:  5'- cUCCGGUuaacgaugaaACCAUGCAGgAGAUUaacacucugcugaucGCCCu -3'
miRNA:   3'- aGGGCCG----------UGGUACGUUgUUUGA---------------CGGG- -5'
2362 5' -54.3 NC_001416.1 + 812 0.66 0.715642
Target:  5'- gCCCGGCGCggacaaaAUGCcGCAgccuguuaaccuGACUGUUCg -3'
miRNA:   3'- aGGGCCGUGg------UACGuUGU------------UUGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 3380 0.66 0.693625
Target:  5'- gUCCGGaaaaGCC--GCGACGAACUGguauCCCa -3'
miRNA:   3'- aGGGCCg---UGGuaCGUUGUUUGAC----GGG- -5'
2362 5' -54.3 NC_001416.1 + 9544 0.67 0.671359
Target:  5'- gCCaCGGuCAgCGUGguGCu--CUGCCCu -3'
miRNA:   3'- aGG-GCC-GUgGUACguUGuuuGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 9482 0.67 0.660163
Target:  5'- -gCCGGUugccgcuguuACCGUGCuGCGAucuuCUGCCa -3'
miRNA:   3'- agGGCCG----------UGGUACGuUGUUu---GACGGg -5'
2362 5' -54.3 NC_001416.1 + 4610 0.67 0.637699
Target:  5'- gUCgCCGGaCACC--GCAuccGCAGGCUGCUg -3'
miRNA:   3'- -AG-GGCC-GUGGuaCGU---UGUUUGACGGg -5'
2362 5' -54.3 NC_001416.1 + 21825 0.67 0.636575
Target:  5'- -aCCGGCACuCAcgGCuguaccgGACAAugagugacugugGCUGCCCu -3'
miRNA:   3'- agGGCCGUG-GUa-CG-------UUGUU------------UGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 9037 0.67 0.634326
Target:  5'- gUCCCGGCACCuuucaccgGCAuuguaggauuugguACAGGCauagcGUCCu -3'
miRNA:   3'- -AGGGCCGUGGua------CGU--------------UGUUUGa----CGGG- -5'
2362 5' -54.3 NC_001416.1 + 18958 0.67 0.623081
Target:  5'- uUCCCGGacgaACCucUGUAACAcACucagaccacgcugaUGCCCa -3'
miRNA:   3'- -AGGGCCg---UGGu-ACGUUGUuUG--------------ACGGG- -5'
2362 5' -54.3 NC_001416.1 + 11101 0.68 0.615215
Target:  5'- gCCCGGCucuggacaggACCA-GCAuACGAuCUGCCg -3'
miRNA:   3'- aGGGCCG----------UGGUaCGU-UGUUuGACGGg -5'
2362 5' -54.3 NC_001416.1 + 3887 0.68 0.570506
Target:  5'- aCCCGGCAUCAggUGCggUAcuuUUGCgCCu -3'
miRNA:   3'- aGGGCCGUGGU--ACGuuGUuu-GACG-GG- -5'
2362 5' -54.3 NC_001416.1 + 13538 0.69 0.526629
Target:  5'- uUCCCaGaGCACCAcGCuGGCcGACUGCuCCg -3'
miRNA:   3'- -AGGG-C-CGUGGUaCG-UUGuUUGACG-GG- -5'
2362 5' -54.3 NC_001416.1 + 12546 0.71 0.443245
Target:  5'- gCgUGGCugCAcuuuuuaccUGCGACAuACUGUCCg -3'
miRNA:   3'- aGgGCCGugGU---------ACGUUGUuUGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 16880 0.71 0.433342
Target:  5'- gCCCGGCGCgGUGUgc----CUGCCCc -3'
miRNA:   3'- aGGGCCGUGgUACGuuguuuGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 45881 0.71 0.403482
Target:  5'- gCCCGGCAgugaagcCCAgauauugcUGCAACGgucGAUUGCCUg -3'
miRNA:   3'- aGGGCCGU-------GGU--------ACGUUGU---UUGACGGG- -5'
2362 5' -54.3 NC_001416.1 + 16279 0.66 0.737316
Target:  5'- uUCgaCGGCACC-UGCAGaauAC-GCCCg -3'
miRNA:   3'- -AGg-GCCGUGGuACGUUguuUGaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.