Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 12546 | 0.71 | 0.443245 |
Target: 5'- gCgUGGCugCAcuuuuuaccUGCGACAuACUGUCCg -3' miRNA: 3'- aGgGCCGugGU---------ACGUUGUuUGACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 12975 | 0.79 | 0.129954 |
Target: 5'- gUCCCGGaCGCC-UGCGACcGGCUGUCUg -3' miRNA: 3'- -AGGGCC-GUGGuACGUUGuUUGACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 13538 | 0.69 | 0.526629 |
Target: 5'- uUCCCaGaGCACCAcGCuGGCcGACUGCuCCg -3' miRNA: 3'- -AGGG-C-CGUGGUaCG-UUGuUUGACG-GG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 13816 | 0.67 | 0.660163 |
Target: 5'- -gCUGGCGCauugagcaGUGCAGCGAACUGagCg -3' miRNA: 3'- agGGCCGUGg-------UACGUUGUUUGACggG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 16279 | 0.66 | 0.737316 |
Target: 5'- uUCgaCGGCACC-UGCAGaauAC-GCCCg -3' miRNA: 3'- -AGg-GCCGUGGuACGUUguuUGaCGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 16880 | 0.71 | 0.433342 |
Target: 5'- gCCCGGCGCgGUGUgc----CUGCCCc -3' miRNA: 3'- aGGGCCGUGgUACGuuguuuGACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 17229 | 0.66 | 0.709069 |
Target: 5'- --aCGGCacguaugccaucaccGCCGUGCAGC-AugUGCCg -3' miRNA: 3'- aggGCCG---------------UGGUACGUUGuUugACGGg -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 18958 | 0.67 | 0.623081 |
Target: 5'- uUCCCGGacgaACCucUGUAACAcACucagaccacgcugaUGCCCa -3' miRNA: 3'- -AGGGCCg---UGGu-ACGUUGUuUG--------------ACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 20020 | 0.67 | 0.648939 |
Target: 5'- -gCCGGCgauGCCAgUGCAuC-AGCUGCUCa -3' miRNA: 3'- agGGCCG---UGGU-ACGUuGuUUGACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 20412 | 0.66 | 0.726529 |
Target: 5'- uUCCuCGGCAacg-GCGGCAGAaaauuCUGCCa -3' miRNA: 3'- -AGG-GCCGUgguaCGUUGUUU-----GACGGg -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 21825 | 0.67 | 0.636575 |
Target: 5'- -aCCGGCACuCAcgGCuguaccgGACAAugagugacugugGCUGCCCu -3' miRNA: 3'- agGGCCGUG-GUa-CG-------UUGUU------------UGACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 31962 | 0.68 | 0.608478 |
Target: 5'- aUCCCGGUACgcUGCAGgauaauguccgguguCAuGCUGCCa -3' miRNA: 3'- -AGGGCCGUGguACGUU---------------GUuUGACGGg -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 32243 | 0.66 | 0.720008 |
Target: 5'- cUCCGGUuaacgaugaaACCAUGCAGgAGAUUaacacucugcugaucGCCCu -3' miRNA: 3'- aGGGCCG----------UGGUACGUUgUUUGA---------------CGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 39925 | 1.13 | 0.000487 |
Target: 5'- uUCCCGGCACCAUGCAACAAACUGCCCg -3' miRNA: 3'- -AGGGCCGUGGUACGUUGUUUGACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 45881 | 0.71 | 0.403482 |
Target: 5'- gCCCGGCAgugaagcCCAgauauugcUGCAACGgucGAUUGCCUg -3' miRNA: 3'- aGGGCCGU-------GGU--------ACGUUGU---UUGACGGG- -5' |
|||||||
2362 | 5' | -54.3 | NC_001416.1 | + | 46537 | 0.69 | 0.51585 |
Target: 5'- aUUuuGGCugCAU-CGACAGuuuucuuCUGCCCa -3' miRNA: 3'- -AGggCCGugGUAcGUUGUUu------GACGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home