miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 59488 0.66 0.754715
Target:  5'- --cGC-GGCCgCcgCGCCaGCGGCGGCGg -3'
miRNA:   3'- gcaCGaCCGG-Ga-GCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 51930 0.66 0.726563
Target:  5'- gCG-GcCUGGUCCcgcucgUCGCCGGCGccacCGACGa -3'
miRNA:   3'- -GCaC-GACCGGG------AGCGGCUGCu---GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 63008 0.66 0.726563
Target:  5'- uCGgcgGCcGcGCCCgcgcgggCGCCGGCGcccGCGGCGa -3'
miRNA:   3'- -GCa--CGaC-CGGGa------GCGGCUGC---UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 67508 0.66 0.726563
Target:  5'- gCGUaGUaGGCCagcgUCGCCGcggcgcccGCGGCGGCGa -3'
miRNA:   3'- -GCA-CGaCCGGg---AGCGGC--------UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 67947 0.66 0.726563
Target:  5'- --cGCcGGCCCgcucgcgcggcCGCCG-CGGCGAUGg -3'
miRNA:   3'- gcaCGaCCGGGa----------GCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 131978 0.66 0.726563
Target:  5'- cCGcGCggccaccaGGCCUUCGCagucgcgGACGGCGACa -3'
miRNA:   3'- -GCaCGa-------CCGGGAGCGg------CUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 95796 0.66 0.736033
Target:  5'- gCGcUGCUaGCCggCGCCGGCGGgGGCu -3'
miRNA:   3'- -GC-ACGAcCGGgaGCGGCUGCUgCUGc -5'
23623 3' -60.4 NC_005261.1 + 115757 0.66 0.736033
Target:  5'- aCGUcGUcGGCCCcgucUCGgCGGCGuCGACGu -3'
miRNA:   3'- -GCA-CGaCCGGG----AGCgGCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 35962 0.66 0.736033
Target:  5'- cCG-GCcaGGCCgCUCgGCCGcuguaGCGGCGGCGg -3'
miRNA:   3'- -GCaCGa-CCGG-GAG-CGGC-----UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 116871 0.66 0.74542
Target:  5'- aGUG--GGCCCcCGCCcGCGAgGACGc -3'
miRNA:   3'- gCACgaCCGGGaGCGGcUGCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 47330 0.66 0.74542
Target:  5'- --aGaaGGCgCgcgCGUCGGCGACGACGc -3'
miRNA:   3'- gcaCgaCCGgGa--GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 51769 0.66 0.74542
Target:  5'- --aGCUGGCgCUgGCCGGCGuCGcCc -3'
miRNA:   3'- gcaCGACCGgGAgCGGCUGCuGCuGc -5'
23623 3' -60.4 NC_005261.1 + 100642 0.66 0.74542
Target:  5'- gCGcGC-GGCCCgCGCCGcaACGGCGcGCGu -3'
miRNA:   3'- -GCaCGaCCGGGaGCGGC--UGCUGC-UGC- -5'
23623 3' -60.4 NC_005261.1 + 29182 0.66 0.74542
Target:  5'- --gGCccgGcGCCCUCGCCG-CGGCGcccgcGCGg -3'
miRNA:   3'- gcaCGa--C-CGGGAGCGGCuGCUGC-----UGC- -5'
23623 3' -60.4 NC_005261.1 + 74908 0.66 0.74542
Target:  5'- cCGcGCUGGCCg-CGCgGGgGAgGGCGa -3'
miRNA:   3'- -GCaCGACCGGgaGCGgCUgCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 104503 0.66 0.75379
Target:  5'- uCGUGCa-GCCgCUCcguggcgGCCG-CGACGGCGg -3'
miRNA:   3'- -GCACGacCGG-GAG-------CGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 89088 0.66 0.754715
Target:  5'- cCG-GCUgcGGCCCgggcgCGCUGGCGcgcGCGugGc -3'
miRNA:   3'- -GCaCGA--CCGGGa----GCGGCUGC---UGCugC- -5'
23623 3' -60.4 NC_005261.1 + 126677 0.66 0.754715
Target:  5'- cCG-GgaGGCCCUCcuCCGAgGcCGGCGg -3'
miRNA:   3'- -GCaCgaCCGGGAGc-GGCUgCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 3153 0.66 0.754715
Target:  5'- cCGUcCgaGGCCC-CGgCGGCGGCGGCc -3'
miRNA:   3'- -GCAcGa-CCGGGaGCgGCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 98308 0.66 0.754715
Target:  5'- uCGgggGCgGGCgC-CGCCGccaGCGGCGGCGc -3'
miRNA:   3'- -GCa--CGaCCGgGaGCGGC---UGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.