miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 89 0.67 0.66254
Target:  5'- gGUGCggggcgcgcccccgGGCCC-CGCCGcccGCGcCGGCGc -3'
miRNA:   3'- gCACGa-------------CCGGGaGCGGC---UGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 225 0.69 0.564275
Target:  5'- gGUGCUcgcgGGCCC-CGCgagcgggcccggcugCGGCGGCGGCu -3'
miRNA:   3'- gCACGA----CCGGGaGCG---------------GCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 673 0.68 0.638894
Target:  5'- aGUcCUGGCCCUcCGCgGACGcuccgcauCGGCGc -3'
miRNA:   3'- gCAcGACCGGGA-GCGgCUGCu-------GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 1068 0.66 0.717016
Target:  5'- gCGggggGCUGGCCC-CGCUccagGGCGAgccCGGCu -3'
miRNA:   3'- -GCa---CGACCGGGaGCGG----CUGCU---GCUGc -5'
23623 3' -60.4 NC_005261.1 + 1293 0.74 0.300822
Target:  5'- cCG-GCggGGCUCccgUCGCCGGCGGCGGCa -3'
miRNA:   3'- -GCaCGa-CCGGG---AGCGGCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 2269 0.68 0.599467
Target:  5'- --cGCUcGUCCUCGCCGgGCGGCGcCGc -3'
miRNA:   3'- gcaCGAcCGGGAGCGGC-UGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 2412 0.68 0.619162
Target:  5'- --cGCgGGCCC-CGCgCGGCGGCGGg- -3'
miRNA:   3'- gcaCGaCCGGGaGCG-GCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 3153 0.66 0.754715
Target:  5'- cCGUcCgaGGCCC-CGgCGGCGGCGGCc -3'
miRNA:   3'- -GCAcGa-CCGGGaGCgGCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 3830 0.72 0.414386
Target:  5'- --cGCgGGCCCgggCGCUGGCGGCaGCGg -3'
miRNA:   3'- gcaCGaCCGGGa--GCGGCUGCUGcUGC- -5'
23623 3' -60.4 NC_005261.1 + 4464 0.69 0.579862
Target:  5'- gCGgcgGC-GGCCCgUCGCgCGGCGccGCGGCGu -3'
miRNA:   3'- -GCa--CGaCCGGG-AGCG-GCUGC--UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 4660 0.68 0.629027
Target:  5'- aGUGUcGGCCg-CGgCGGCGGCGGCc -3'
miRNA:   3'- gCACGaCCGGgaGCgGCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 5912 0.69 0.579862
Target:  5'- cCGgccgGCUGGCUagCUCGCuCGACGGCaaGGCu -3'
miRNA:   3'- -GCa---CGACCGG--GAGCG-GCUGCUG--CUGc -5'
23623 3' -60.4 NC_005261.1 + 6066 0.69 0.541113
Target:  5'- -----gGGcCCCUCGucCCGACGGCGGCGg -3'
miRNA:   3'- gcacgaCC-GGGAGC--GGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 9524 0.68 0.603401
Target:  5'- aCGaucCUGGagCCUCGCCGACGaccccccggaagccuGCGACGa -3'
miRNA:   3'- -GCac-GACCg-GGAGCGGCUGC---------------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 10874 0.68 0.598484
Target:  5'- aCGUGUUcuuccccGaGCCCggCGCCaACGGCGGCGg -3'
miRNA:   3'- -GCACGA-------C-CGGGa-GCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 11933 0.71 0.440063
Target:  5'- -cUGCggcGGCCCgCGCCG-CGGCGGCu -3'
miRNA:   3'- gcACGa--CCGGGaGCGGCuGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 16057 0.67 0.668435
Target:  5'- --aGCgGGCCCgCGCCGAgcCGGCG-CGu -3'
miRNA:   3'- gcaCGaCCGGGaGCGGCU--GCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 16414 0.68 0.619162
Target:  5'- gGUGCgggagaGGCCCccUCGaCGGCGgGCGGCGg -3'
miRNA:   3'- gCACGa-----CCGGG--AGCgGCUGC-UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 18140 0.7 0.512628
Target:  5'- --cGCaGGCCCagUCGCCGAUGGCGuCc -3'
miRNA:   3'- gcaCGaCCGGG--AGCGGCUGCUGCuGc -5'
23623 3' -60.4 NC_005261.1 + 21210 0.77 0.198134
Target:  5'- --cGCUGGCCC-CgGCCG-CGACGGCGg -3'
miRNA:   3'- gcaCGACCGGGaG-CGGCuGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.