miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 23162 0.68 0.609307
Target:  5'- aGUG--GGCCCggcaggcgCGCCGGgGGCGACa -3'
miRNA:   3'- gCACgaCCGGGa-------GCGGCUgCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 23576 0.69 0.550728
Target:  5'- --gGCUGGCCgUgGCUcAUGGCGGCGg -3'
miRNA:   3'- gcaCGACCGGgAgCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 23602 0.7 0.522058
Target:  5'- gGUGgUGGCUgUCGCCGcCGcugccggggcGCGGCGg -3'
miRNA:   3'- gCACgACCGGgAGCGGCuGC----------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 24376 0.67 0.688005
Target:  5'- gGUGCUcccGGUgggCUCGUCGGCGGCGggGCGg -3'
miRNA:   3'- gCACGA---CCGg--GAGCGGCUGCUGC--UGC- -5'
23623 3' -60.4 NC_005261.1 + 28652 0.7 0.48478
Target:  5'- aGUGacgaGGCCggCgggGCCGACGACGACGa -3'
miRNA:   3'- gCACga--CCGGgaG---CGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 29182 0.66 0.74542
Target:  5'- --gGCccgGcGCCCUCGCCG-CGGCGcccgcGCGg -3'
miRNA:   3'- gcaCGa--C-CGGGAGCGGCuGCUGC-----UGC- -5'
23623 3' -60.4 NC_005261.1 + 29798 0.69 0.531555
Target:  5'- --cGgaGGCCggCGCCGGCGGCG-CGg -3'
miRNA:   3'- gcaCgaCCGGgaGCGGCUGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 30295 0.69 0.532508
Target:  5'- --cGCUGGCCCgcgcgcucuucagccCGCCGGCGGaagugcCGGCGc -3'
miRNA:   3'- gcaCGACCGGGa--------------GCGGCUGCU------GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 31107 0.75 0.262623
Target:  5'- cCG-GC-GGCCC-CGCCGcCGACGGCGg -3'
miRNA:   3'- -GCaCGaCCGGGaGCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 31309 0.67 0.696759
Target:  5'- cCGcGCggGGCCCgcgggcgcgcUCGCCGccagcgcgccgcuGCGGCGGCGc -3'
miRNA:   3'- -GCaCGa-CCGGG----------AGCGGC-------------UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 31675 0.69 0.550728
Target:  5'- gCG-GCUGGCCgCg-GCgCGGCGGCGGCu -3'
miRNA:   3'- -GCaCGACCGG-GagCG-GCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 31845 0.67 0.697729
Target:  5'- cCGUGCUGG-CCUCGC-GGCG-CGucuuCGg -3'
miRNA:   3'- -GCACGACCgGGAGCGgCUGCuGCu---GC- -5'
23623 3' -60.4 NC_005261.1 + 32479 0.66 0.707402
Target:  5'- uCGgGCUu-CCCgggGCCGGCGACGGCGg -3'
miRNA:   3'- -GCaCGAccGGGag-CGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 33789 0.68 0.619162
Target:  5'- --cGCUgGGCCCcgCGCgGGCGGCGGg- -3'
miRNA:   3'- gcaCGA-CCGGGa-GCGgCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 34576 0.73 0.335824
Target:  5'- gCGaUGCUGGCCgagUGCggcuuCGACGACGACGg -3'
miRNA:   3'- -GC-ACGACCGGga-GCG-----GCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 35962 0.66 0.736033
Target:  5'- cCG-GCcaGGCCgCUCgGCCGcuguaGCGGCGGCGg -3'
miRNA:   3'- -GCaCGa-CCGG-GAG-CGGC-----UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 36880 0.67 0.668435
Target:  5'- --cGCUGGCCCgcgcccuuccUCGCCaaGGCG-CGACc -3'
miRNA:   3'- gcaCGACCGGG----------AGCGG--CUGCuGCUGc -5'
23623 3' -60.4 NC_005261.1 + 38295 0.71 0.431402
Target:  5'- gGUGCUGGCCCgccugagcgCGCagGGCGGCccGAUGg -3'
miRNA:   3'- gCACGACCGGGa--------GCGg-CUGCUG--CUGC- -5'
23623 3' -60.4 NC_005261.1 + 38617 0.73 0.341693
Target:  5'- gGUGUUGGCCgCggccgagcccgcCGCCGACGGUGACGg -3'
miRNA:   3'- gCACGACCGG-Ga-----------GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 38916 0.67 0.658605
Target:  5'- gCGcGCgGGCCCgcgcgccaaGCCGGCGGCcgGGCGg -3'
miRNA:   3'- -GCaCGaCCGGGag-------CGGCUGCUG--CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.