miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 39221 0.69 0.541113
Target:  5'- --cGCcaUGGCCCUCGCgCG-CGcCGGCGa -3'
miRNA:   3'- gcaCG--ACCGGGAGCG-GCuGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 40233 0.66 0.724659
Target:  5'- uCGUcuCUGGCCCgggggccgugagCGCC-AUGGCGGCGg -3'
miRNA:   3'- -GCAc-GACCGGGa-----------GCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 41053 0.66 0.726563
Target:  5'- --cGCcGGCCUcagaGCCGGCGGCG-CGg -3'
miRNA:   3'- gcaCGaCCGGGag--CGGCUGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 42111 0.66 0.717016
Target:  5'- uGUGCcGGCCCagcagcccggccUCGUCGAUGACa--- -3'
miRNA:   3'- gCACGaCCGGG------------AGCGGCUGCUGcugc -5'
23623 3' -60.4 NC_005261.1 + 43352 0.67 0.697729
Target:  5'- uGUGCcuggGGCUggUGCCGcuGCGGCGGCa -3'
miRNA:   3'- gCACGa---CCGGgaGCGGC--UGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 43393 0.69 0.531555
Target:  5'- gGUGCcGGCaCCguccaggCGCCGGgGGCGGCc -3'
miRNA:   3'- gCACGaCCG-GGa------GCGGCUgCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 44232 0.66 0.707402
Target:  5'- gCGcUGCUGGCCgCccagcgcgCgGCCGACGccGCGGCGc -3'
miRNA:   3'- -GC-ACGACCGG-Ga-------G-CGGCUGC--UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 46377 0.76 0.21233
Target:  5'- aGUGCUcgcucucggcgccGGCCCcgUCGCCGACGGUGGCGu -3'
miRNA:   3'- gCACGA-------------CCGGG--AGCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 47330 0.66 0.74542
Target:  5'- --aGaaGGCgCgcgCGUCGGCGACGACGc -3'
miRNA:   3'- gcaCgaCCGgGa--GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 49183 0.75 0.256654
Target:  5'- gGUGCUcggccaGGCCCUCgGCCGACaGCGAgGg -3'
miRNA:   3'- gCACGA------CCGGGAG-CGGCUGcUGCUgC- -5'
23623 3' -60.4 NC_005261.1 + 51769 0.66 0.74542
Target:  5'- --aGCUGGCgCUgGCCGGCGuCGcCc -3'
miRNA:   3'- gcaCGACCGgGAgCGGCUGCuGCuGc -5'
23623 3' -60.4 NC_005261.1 + 51930 0.66 0.726563
Target:  5'- gCG-GcCUGGUCCcgcucgUCGCCGGCGccacCGACGa -3'
miRNA:   3'- -GCaC-GACCGGG------AGCGGCUGCu---GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 51974 0.7 0.479296
Target:  5'- gCGcUGCUGGaCCgcggCGCCgccgccgacuucgagGACGACGACGa -3'
miRNA:   3'- -GC-ACGACCgGGa---GCGG---------------CUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 56549 0.69 0.541113
Target:  5'- cCG-GCUGGUgggcacguccuUCUCGCaccuCGGCGGCGACGa -3'
miRNA:   3'- -GCaCGACCG-----------GGAGCG----GCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 57935 0.7 0.493985
Target:  5'- gCGUGCUGcccggcaccagcGCCCgugugcgcaCGCCGGCGACGcagGCGc -3'
miRNA:   3'- -GCACGAC------------CGGGa--------GCGGCUGCUGC---UGC- -5'
23623 3' -60.4 NC_005261.1 + 59397 0.67 0.697729
Target:  5'- --cGCcGaGCCCgggcUCGCCGGCGcCGGCGc -3'
miRNA:   3'- gcaCGaC-CGGG----AGCGGCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 59488 0.66 0.754715
Target:  5'- --cGC-GGCCgCcgCGCCaGCGGCGGCGg -3'
miRNA:   3'- gcaCGaCCGG-Ga-GCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 59775 0.69 0.550728
Target:  5'- uGUGCUcGGCCgcaG-CGACGGCGGCGg -3'
miRNA:   3'- gCACGA-CCGGgagCgGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 60026 0.68 0.638894
Target:  5'- --cGaaGaGCCCgccgccgucggCGCCGACGGCGGCGg -3'
miRNA:   3'- gcaCgaC-CGGGa----------GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 60911 0.69 0.560395
Target:  5'- -cUGCUcuaccGGCCCUC-CaCGGCGGCGACc -3'
miRNA:   3'- gcACGA-----CCGGGAGcG-GCUGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.