miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 16057 0.67 0.668435
Target:  5'- --aGCgGGCCCgCGCCGAgcCGGCG-CGu -3'
miRNA:   3'- gcaCGaCCGGGaGCGGCU--GCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 117592 0.67 0.668435
Target:  5'- --cGCUGucgaUCCU-GCCGACGAUGACGa -3'
miRNA:   3'- gcaCGACc---GGGAgCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 116012 0.67 0.668435
Target:  5'- --gGC-GGCCUgagcCGCCGACGGCG-CGc -3'
miRNA:   3'- gcaCGaCCGGGa---GCGGCUGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 68717 0.67 0.697729
Target:  5'- --cGCcGGCCCUCacgcgGCgGGCGcCGGCGg -3'
miRNA:   3'- gcaCGaCCGGGAG-----CGgCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 43352 0.67 0.697729
Target:  5'- uGUGCcuggGGCUggUGCCGcuGCGGCGGCa -3'
miRNA:   3'- gCACGa---CCGGgaGCGGC--UGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 31845 0.67 0.697729
Target:  5'- cCGUGCUGG-CCUCGC-GGCG-CGucuuCGg -3'
miRNA:   3'- -GCACGACCgGGAGCGgCUGCuGCu---GC- -5'
23623 3' -60.4 NC_005261.1 + 31309 0.67 0.696759
Target:  5'- cCGcGCggGGCCCgcgggcgcgcUCGCCGccagcgcgccgcuGCGGCGGCGc -3'
miRNA:   3'- -GCaCGa-CCGGG----------AGCGGC-------------UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 135663 0.67 0.696759
Target:  5'- gCGgGC-GGCCCUCGCuCGAgGagcucugcgccgcGCGGCGg -3'
miRNA:   3'- -GCaCGaCCGGGAGCG-GCUgC-------------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 70500 0.67 0.688005
Target:  5'- aCGUaGCUGGCgUUCGgCGccACGGgGACGa -3'
miRNA:   3'- -GCA-CGACCGgGAGCgGC--UGCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 24376 0.67 0.688005
Target:  5'- gGUGCUcccGGUgggCUCGUCGGCGGCGggGCGg -3'
miRNA:   3'- gCACGA---CCGg--GAGCGGCUGCUGC--UGC- -5'
23623 3' -60.4 NC_005261.1 + 130777 0.67 0.678237
Target:  5'- --aGCUGGCgCCccgCGCUGGCcgcaccgcgGACGACGc -3'
miRNA:   3'- gcaCGACCG-GGa--GCGGCUG---------CUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 36880 0.67 0.668435
Target:  5'- --cGCUGGCCCgcgcccuuccUCGCCaaGGCG-CGACc -3'
miRNA:   3'- gcaCGACCGGG----------AGCGG--CUGCuGCUGc -5'
23623 3' -60.4 NC_005261.1 + 132628 0.67 0.688005
Target:  5'- --cGCUGGCgCCgaggaCGCgGGCG-CGGCGg -3'
miRNA:   3'- gcaCGACCG-GGa----GCGgCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 65575 0.68 0.609307
Target:  5'- aGUGCcgcaccUGGUCCgcgagcuccugcUCGCCGGgguCGGCGACGu -3'
miRNA:   3'- gCACG------ACCGGG------------AGCGGCU---GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 23162 0.68 0.609307
Target:  5'- aGUG--GGCCCggcaggcgCGCCGGgGGCGACa -3'
miRNA:   3'- gCACgaCCGGGa-------GCGGCUgCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 93520 0.68 0.608322
Target:  5'- cCGUGUUGGCCgCgaggaagcccgcgcgCGCCGcccaguagcgguCGACGGCGg -3'
miRNA:   3'- -GCACGACCGG-Ga--------------GCGGCu-----------GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 9524 0.68 0.603401
Target:  5'- aCGaucCUGGagCCUCGCCGACGaccccccggaagccuGCGACGa -3'
miRNA:   3'- -GCac-GACCg-GGAGCGGCUGC---------------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 135013 0.68 0.599467
Target:  5'- gCG-GCgGGCCCgcacgCgGCCG-CGGCGGCGa -3'
miRNA:   3'- -GCaCGaCCGGGa----G-CGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76423 0.68 0.593574
Target:  5'- gCGUGCagagcgccggcgccaUGGCggaCgCGcCCGACGGCGACGg -3'
miRNA:   3'- -GCACG---------------ACCGg--GaGC-GGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 121813 0.68 0.58965
Target:  5'- gCGUgGCUgGGCUCUgcgggcCGCCG-CGGCGGCGc -3'
miRNA:   3'- -GCA-CGA-CCGGGA------GCGGCuGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.