miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 18140 0.7 0.512628
Target:  5'- --cGCaGGCCCagUCGCCGAUGGCGuCc -3'
miRNA:   3'- gcaCGaCCGGG--AGCGGCUGCUGCuGc -5'
23623 3' -60.4 NC_005261.1 + 69488 0.7 0.522058
Target:  5'- gCGaUGCUGGUgcaCCUguaCGCCGGCGGCGGg- -3'
miRNA:   3'- -GC-ACGACCG---GGA---GCGGCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 23602 0.7 0.522058
Target:  5'- gGUGgUGGCUgUCGCCGcCGcugccggggcGCGGCGg -3'
miRNA:   3'- gCACgACCGGgAGCGGCuGC----------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 43393 0.69 0.531555
Target:  5'- gGUGCcGGCaCCguccaggCGCCGGgGGCGGCc -3'
miRNA:   3'- gCACGaCCG-GGa------GCGGCUgCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 29798 0.69 0.531555
Target:  5'- --cGgaGGCCggCGCCGGCGGCG-CGg -3'
miRNA:   3'- gcaCgaCCGGgaGCGGCUGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 73779 0.69 0.531555
Target:  5'- --cGCUGGCCUgcgacgugCGCgCGGCGGuCGGCGc -3'
miRNA:   3'- gcaCGACCGGGa-------GCG-GCUGCU-GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 30295 0.69 0.532508
Target:  5'- --cGCUGGCCCgcgcgcucuucagccCGCCGGCGGaagugcCGGCGc -3'
miRNA:   3'- gcaCGACCGGGa--------------GCGGCUGCU------GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 6066 0.69 0.541113
Target:  5'- -----gGGcCCCUCGucCCGACGGCGGCGg -3'
miRNA:   3'- gcacgaCC-GGGAGC--GGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 56549 0.69 0.541113
Target:  5'- cCG-GCUGGUgggcacguccuUCUCGCaccuCGGCGGCGACGa -3'
miRNA:   3'- -GCaCGACCG-----------GGAGCG----GCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 133787 0.69 0.541113
Target:  5'- uCGUGCggcgcaucccGCCCgggcUGCuCGACGGCGACGa -3'
miRNA:   3'- -GCACGac--------CGGGa---GCG-GCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 118420 0.69 0.541113
Target:  5'- cCGcGCUGGCUgUCGCCGcCGcggacgccgccGCGGCGc -3'
miRNA:   3'- -GCaCGACCGGgAGCGGCuGC-----------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 131877 0.69 0.541113
Target:  5'- --aGCUGGCggCCgcCGCCGcacGCGACGGCGc -3'
miRNA:   3'- gcaCGACCG--GGa-GCGGC---UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 39221 0.69 0.541113
Target:  5'- --cGCcaUGGCCCUCGCgCG-CGcCGGCGa -3'
miRNA:   3'- gcaCG--ACCGGGAGCG-GCuGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 31675 0.69 0.550728
Target:  5'- gCG-GCUGGCCgCg-GCgCGGCGGCGGCu -3'
miRNA:   3'- -GCaCGACCGG-GagCG-GCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 59775 0.69 0.550728
Target:  5'- uGUGCUcGGCCgcaG-CGACGGCGGCGg -3'
miRNA:   3'- gCACGA-CCGGgagCgGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 23576 0.69 0.550728
Target:  5'- --gGCUGGCCgUgGCUcAUGGCGGCGg -3'
miRNA:   3'- gcaCGACCGGgAgCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 60911 0.69 0.560395
Target:  5'- -cUGCUcuaccGGCCCUC-CaCGGCGGCGACc -3'
miRNA:   3'- gcACGA-----CCGGGAGcG-GCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 134368 0.69 0.560395
Target:  5'- gCGggggGC-GGCgC-CGCUGGCGACGGCGa -3'
miRNA:   3'- -GCa---CGaCCGgGaGCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 225 0.69 0.564275
Target:  5'- gGUGCUcgcgGGCCC-CGCgagcgggcccggcugCGGCGGCGGCu -3'
miRNA:   3'- gCACGA----CCGGGaGCG---------------GCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 137908 0.69 0.564275
Target:  5'- gGUGCUcgcgGGCCC-CGCgagcgggcccggcugCGGCGGCGGCu -3'
miRNA:   3'- gCACGA----CCGGGaGCG---------------GCUGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.