miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 135501 0.72 0.397788
Target:  5'- aCGcGCUGGCCUcaGCCGACGAgugccUGACGu -3'
miRNA:   3'- -GCaCGACCGGGagCGGCUGCU-----GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 112065 0.72 0.414386
Target:  5'- uCGgGC-GuGCCCUCGUCGGCGAgGGCGc -3'
miRNA:   3'- -GCaCGaC-CGGGAGCGGCUGCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 3830 0.72 0.414386
Target:  5'- --cGCgGGCCCgggCGCUGGCGGCaGCGg -3'
miRNA:   3'- gcaCGaCCGGGa--GCGGCUGCUGcUGC- -5'
23623 3' -60.4 NC_005261.1 + 127356 0.71 0.420295
Target:  5'- --cGCUgGGCCCgcguggcuaggaugUCGuuGGCGGCGGCGa -3'
miRNA:   3'- gcaCGA-CCGGG--------------AGCggCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 38295 0.71 0.431402
Target:  5'- gGUGCUGGCCCgccugagcgCGCagGGCGGCccGAUGg -3'
miRNA:   3'- gCACGACCGGGa--------GCGg-CUGCUG--CUGC- -5'
23623 3' -60.4 NC_005261.1 + 127795 0.71 0.440063
Target:  5'- gCG-GCgGGCCggCGCCG-CGGCGGCGg -3'
miRNA:   3'- -GCaCGaCCGGgaGCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 11933 0.71 0.440063
Target:  5'- -cUGCggcGGCCCgCGCCG-CGGCGGCu -3'
miRNA:   3'- gcACGa--CCGGGaGCGGCuGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 77641 0.71 0.466621
Target:  5'- --gGCcGGCgCCaUCGCCGACGGcCGGCGc -3'
miRNA:   3'- gcaCGaCCG-GG-AGCGGCUGCU-GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 116604 0.7 0.47475
Target:  5'- -aUGCUGccgcaGCCCUcgcaccgcccgccCGCCGACGAgGGCGa -3'
miRNA:   3'- gcACGAC-----CGGGA-------------GCGGCUGCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 131023 0.7 0.475657
Target:  5'- aCGUGUUccaGGCCgagcgCGCCGGCGACGcCGc -3'
miRNA:   3'- -GCACGA---CCGGga---GCGGCUGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 104440 0.7 0.475657
Target:  5'- --aGCgGGCCCgcgucgcCGCCGcCGGCGGCGc -3'
miRNA:   3'- gcaCGaCCGGGa------GCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 51974 0.7 0.479296
Target:  5'- gCGcUGCUGGaCCgcggCGCCgccgccgacuucgagGACGACGACGa -3'
miRNA:   3'- -GC-ACGACCgGGa---GCGG---------------CUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 110587 0.7 0.48478
Target:  5'- aCGUGCcGGCCUgcgCGUUccugGACGugGACGc -3'
miRNA:   3'- -GCACGaCCGGGa--GCGG----CUGCugCUGC- -5'
23623 3' -60.4 NC_005261.1 + 28652 0.7 0.48478
Target:  5'- aGUGacgaGGCCggCgggGCCGACGACGACGa -3'
miRNA:   3'- gCACga--CCGGgaG---CGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 57935 0.7 0.493985
Target:  5'- gCGUGCUGcccggcaccagcGCCCgugugcgcaCGCCGGCGACGcagGCGc -3'
miRNA:   3'- -GCACGAC------------CGGGa--------GCGGCUGCUGC---UGC- -5'
23623 3' -60.4 NC_005261.1 + 103843 0.7 0.503269
Target:  5'- --aGCUcGCCCUUGCgcgcgagccgCGGCGGCGGCGg -3'
miRNA:   3'- gcaCGAcCGGGAGCG----------GCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 107116 0.7 0.503269
Target:  5'- --aGCcGcGCCaccgCGCCGGCGACGGCGc -3'
miRNA:   3'- gcaCGaC-CGGga--GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 128857 0.7 0.503269
Target:  5'- gGUGCcccGCCUcgUCGCUGcCGACGACGa -3'
miRNA:   3'- gCACGac-CGGG--AGCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 91209 0.7 0.507004
Target:  5'- cCGUGCUggccgaGGCCCacgccaagaUCGCCGAcccggcgcuggacauCGGCGACu -3'
miRNA:   3'- -GCACGA------CCGGG---------AGCGGCU---------------GCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 118609 0.7 0.512628
Target:  5'- uCGcGCUGucggccguuGCCCUgGCCGccGCGGCGGCGc -3'
miRNA:   3'- -GCaCGAC---------CGGGAgCGGC--UGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.