miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 67508 0.66 0.726563
Target:  5'- gCGUaGUaGGCCagcgUCGCCGcggcgcccGCGGCGGCGa -3'
miRNA:   3'- -GCA-CGaCCGGg---AGCGGC--------UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 40233 0.66 0.724659
Target:  5'- uCGUcuCUGGCCCgggggccgugagCGCC-AUGGCGGCGg -3'
miRNA:   3'- -GCAc-GACCGGGa-----------GCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 103499 0.66 0.717016
Target:  5'- aCGUcGUcGGCgC-CGCgGACGGCGGCGu -3'
miRNA:   3'- -GCA-CGaCCGgGaGCGgCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 88444 0.66 0.717016
Target:  5'- cCGcUGCUGGCCg-CGCCGcgugagcgUGugGGCGg -3'
miRNA:   3'- -GC-ACGACCGGgaGCGGCu-------GCugCUGC- -5'
23623 3' -60.4 NC_005261.1 + 42111 0.66 0.717016
Target:  5'- uGUGCcGGCCCagcagcccggccUCGUCGAUGACa--- -3'
miRNA:   3'- gCACGaCCGGG------------AGCGGCUGCUGcugc -5'
23623 3' -60.4 NC_005261.1 + 1068 0.66 0.717016
Target:  5'- gCGggggGCUGGCCC-CGCUccagGGCGAgccCGGCu -3'
miRNA:   3'- -GCa---CGACCGGGaGCGG----CUGCU---GCUGc -5'
23623 3' -60.4 NC_005261.1 + 109203 0.66 0.707402
Target:  5'- gCGUGCgcaGGCgCUCGuaGGCG-CGGCa -3'
miRNA:   3'- -GCACGa--CCGgGAGCggCUGCuGCUGc -5'
23623 3' -60.4 NC_005261.1 + 44232 0.66 0.707402
Target:  5'- gCGcUGCUGGCCgCccagcgcgCgGCCGACGccGCGGCGc -3'
miRNA:   3'- -GC-ACGACCGG-Ga-------G-CGGCUGC--UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 133841 0.66 0.707402
Target:  5'- gCGUGC-GcGCCgUgGCCGGCGcgcGCGACu -3'
miRNA:   3'- -GCACGaC-CGGgAgCGGCUGC---UGCUGc -5'
23623 3' -60.4 NC_005261.1 + 32479 0.66 0.707402
Target:  5'- uCGgGCUu-CCCgggGCCGGCGACGGCGg -3'
miRNA:   3'- -GCaCGAccGGGag-CGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 136608 0.66 0.707402
Target:  5'- gCGUGgagcGGCgCgcgcgCGCCGAgGGCGGCGg -3'
miRNA:   3'- -GCACga--CCGgGa----GCGGCUgCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 59397 0.67 0.697729
Target:  5'- --cGCcGaGCCCgggcUCGCCGGCGcCGGCGc -3'
miRNA:   3'- gcaCGaC-CGGG----AGCGGCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 68717 0.67 0.697729
Target:  5'- --cGCcGGCCCUCacgcgGCgGGCGcCGGCGg -3'
miRNA:   3'- gcaCGaCCGGGAG-----CGgCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 43352 0.67 0.697729
Target:  5'- uGUGCcuggGGCUggUGCCGcuGCGGCGGCa -3'
miRNA:   3'- gCACGa---CCGGgaGCGGC--UGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 31845 0.67 0.697729
Target:  5'- cCGUGCUGG-CCUCGC-GGCG-CGucuuCGg -3'
miRNA:   3'- -GCACGACCgGGAGCGgCUGCuGCu---GC- -5'
23623 3' -60.4 NC_005261.1 + 31309 0.67 0.696759
Target:  5'- cCGcGCggGGCCCgcgggcgcgcUCGCCGccagcgcgccgcuGCGGCGGCGc -3'
miRNA:   3'- -GCaCGa-CCGGG----------AGCGGC-------------UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 135663 0.67 0.696759
Target:  5'- gCGgGC-GGCCCUCGCuCGAgGagcucugcgccgcGCGGCGg -3'
miRNA:   3'- -GCaCGaCCGGGAGCG-GCUgC-------------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 132628 0.67 0.688005
Target:  5'- --cGCUGGCgCCgaggaCGCgGGCG-CGGCGg -3'
miRNA:   3'- gcaCGACCG-GGa----GCGgCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 70500 0.67 0.688005
Target:  5'- aCGUaGCUGGCgUUCGgCGccACGGgGACGa -3'
miRNA:   3'- -GCA-CGACCGgGAGCgGC--UGCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 24376 0.67 0.688005
Target:  5'- gGUGCUcccGGUgggCUCGUCGGCGGCGggGCGg -3'
miRNA:   3'- gCACGA---CCGg--GAGCGGCUGCUGC--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.