miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 76672 1.08 0.001544
Target:  5'- cCGUGCUGGCCCUCGCCGACGACGACGc -3'
miRNA:   3'- -GCACGACCGGGAGCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 101457 0.83 0.078592
Target:  5'- --cGCUGGCCCcagcgcCGCCGGCGGCGGCGu -3'
miRNA:   3'- gcaCGACCGGGa-----GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 68689 0.77 0.188833
Target:  5'- gCGUGggGGCCggCGCgGACGACGGCGg -3'
miRNA:   3'- -GCACgaCCGGgaGCGgCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 69255 0.77 0.188833
Target:  5'- --cGCUGGCCCgCGCCGACccCGGCGa -3'
miRNA:   3'- gcaCGACCGGGaGCGGCUGcuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 21210 0.77 0.198134
Target:  5'- --cGCUGGCCC-CgGCCG-CGACGGCGg -3'
miRNA:   3'- gcaCGACCGGGaG-CGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 46377 0.76 0.21233
Target:  5'- aGUGCUcgcucucggcgccGGCCCcgUCGCCGACGGUGGCGu -3'
miRNA:   3'- gCACGA-------------CCGGG--AGCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 49183 0.75 0.256654
Target:  5'- gGUGCUcggccaGGCCCUCgGCCGACaGCGAgGg -3'
miRNA:   3'- gCACGA------CCGGGAG-CGGCUGcUGCUgC- -5'
23623 3' -60.4 NC_005261.1 + 119008 0.75 0.259028
Target:  5'- -cUGCUgGGCCCgCGCCGACGAaugagcggacgucgcCGACGg -3'
miRNA:   3'- gcACGA-CCGGGaGCGGCUGCU---------------GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 31107 0.75 0.262623
Target:  5'- cCG-GC-GGCCC-CGCCGcCGACGGCGg -3'
miRNA:   3'- -GCaCGaCCGGGaGCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 130694 0.75 0.2749
Target:  5'- gCGUGCUGcucgaGCaCCUCGCCGAgGACGuCa -3'
miRNA:   3'- -GCACGAC-----CG-GGAGCGGCUgCUGCuGc -5'
23623 3' -60.4 NC_005261.1 + 1293 0.74 0.300822
Target:  5'- cCG-GCggGGCUCccgUCGCCGGCGGCGGCa -3'
miRNA:   3'- -GCaCGa-CCGGG---AGCGGCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 82882 0.74 0.321476
Target:  5'- --cGCUGGCgguggCCUCGCCGcGCGcCGACGa -3'
miRNA:   3'- gcaCGACCG-----GGAGCGGC-UGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 34576 0.73 0.335824
Target:  5'- gCGaUGCUGGCCgagUGCggcuuCGACGACGACGg -3'
miRNA:   3'- -GC-ACGACCGGga-GCG-----GCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 38617 0.73 0.341693
Target:  5'- gGUGUUGGCCgCggccgagcccgcCGCCGACGGUGACGg -3'
miRNA:   3'- gCACGACCGG-Ga-----------GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 90376 0.73 0.343172
Target:  5'- uCGUGCgcggcgaGGCCC-CGCCGGCGGggcUGGCGc -3'
miRNA:   3'- -GCACGa------CCGGGaGCGGCUGCU---GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 96118 0.73 0.350634
Target:  5'- aCGUcGCUGGCCauggUCGaCCuGCGGCGGCGg -3'
miRNA:   3'- -GCA-CGACCGGg---AGC-GGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 69540 0.73 0.365903
Target:  5'- --cGCUGGCgCgcgCGCUGGgGACGGCGg -3'
miRNA:   3'- gcaCGACCGgGa--GCGGCUgCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 71990 0.72 0.372921
Target:  5'- gGUGCgcagcgucgccccUGGCCUUaaCGCCGGgGGCGACGc -3'
miRNA:   3'- gCACG-------------ACCGGGA--GCGGCUgCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 87497 0.72 0.388037
Target:  5'- cCGUGCUGGCgCgcaggcgcucgcCGCCGugGAaGACGa -3'
miRNA:   3'- -GCACGACCGgGa-----------GCGGCugCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 82046 0.72 0.389651
Target:  5'- gGUGCgucagcgcgGGCCacgUCGCCGGguCGACGGCGu -3'
miRNA:   3'- gCACGa--------CCGGg--AGCGGCU--GCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.