miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 21210 0.77 0.198134
Target:  5'- --cGCUGGCCC-CgGCCG-CGACGGCGg -3'
miRNA:   3'- gcaCGACCGGGaG-CGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 46377 0.76 0.21233
Target:  5'- aGUGCUcgcucucggcgccGGCCCcgUCGCCGACGGUGGCGu -3'
miRNA:   3'- gCACGA-------------CCGGG--AGCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 49183 0.75 0.256654
Target:  5'- gGUGCUcggccaGGCCCUCgGCCGACaGCGAgGg -3'
miRNA:   3'- gCACGA------CCGGGAG-CGGCUGcUGCUgC- -5'
23623 3' -60.4 NC_005261.1 + 119008 0.75 0.259028
Target:  5'- -cUGCUgGGCCCgCGCCGACGAaugagcggacgucgcCGACGg -3'
miRNA:   3'- gcACGA-CCGGGaGCGGCUGCU---------------GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 31107 0.75 0.262623
Target:  5'- cCG-GC-GGCCC-CGCCGcCGACGGCGg -3'
miRNA:   3'- -GCaCGaCCGGGaGCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 130694 0.75 0.2749
Target:  5'- gCGUGCUGcucgaGCaCCUCGCCGAgGACGuCa -3'
miRNA:   3'- -GCACGAC-----CG-GGAGCGGCUgCUGCuGc -5'
23623 3' -60.4 NC_005261.1 + 1293 0.74 0.300822
Target:  5'- cCG-GCggGGCUCccgUCGCCGGCGGCGGCa -3'
miRNA:   3'- -GCaCGa-CCGGG---AGCGGCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 82882 0.74 0.321476
Target:  5'- --cGCUGGCgguggCCUCGCCGcGCGcCGACGa -3'
miRNA:   3'- gcaCGACCG-----GGAGCGGC-UGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 34576 0.73 0.335824
Target:  5'- gCGaUGCUGGCCgagUGCggcuuCGACGACGACGg -3'
miRNA:   3'- -GC-ACGACCGGga-GCG-----GCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 38617 0.73 0.341693
Target:  5'- gGUGUUGGCCgCggccgagcccgcCGCCGACGGUGACGg -3'
miRNA:   3'- gCACGACCGG-Ga-----------GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 90376 0.73 0.343172
Target:  5'- uCGUGCgcggcgaGGCCC-CGCCGGCGGggcUGGCGc -3'
miRNA:   3'- -GCACGa------CCGGGaGCGGCUGCU---GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 96118 0.73 0.350634
Target:  5'- aCGUcGCUGGCCauggUCGaCCuGCGGCGGCGg -3'
miRNA:   3'- -GCA-CGACCGGg---AGC-GGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 104440 0.7 0.475657
Target:  5'- --aGCgGGCCCgcgucgcCGCCGcCGGCGGCGc -3'
miRNA:   3'- gcaCGaCCGGGa------GCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 11933 0.71 0.440063
Target:  5'- -cUGCggcGGCCCgCGCCG-CGGCGGCu -3'
miRNA:   3'- gcACGa--CCGGGaGCGGCuGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 127795 0.71 0.440063
Target:  5'- gCG-GCgGGCCggCGCCG-CGGCGGCGg -3'
miRNA:   3'- -GCaCGaCCGGgaGCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 77641 0.71 0.466621
Target:  5'- --gGCcGGCgCCaUCGCCGACGGcCGGCGc -3'
miRNA:   3'- gcaCGaCCG-GG-AGCGGCUGCU-GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 116604 0.7 0.47475
Target:  5'- -aUGCUGccgcaGCCCUcgcaccgcccgccCGCCGACGAgGGCGa -3'
miRNA:   3'- gcACGAC-----CGGGA-------------GCGGCUGCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 51974 0.7 0.479296
Target:  5'- gCGcUGCUGGaCCgcggCGCCgccgccgacuucgagGACGACGACGa -3'
miRNA:   3'- -GC-ACGACCgGGa---GCGG---------------CUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 28652 0.7 0.48478
Target:  5'- aGUGacgaGGCCggCgggGCCGACGACGACGa -3'
miRNA:   3'- gCACga--CCGGgaG---CGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 38295 0.71 0.431402
Target:  5'- gGUGCUGGCCCgccugagcgCGCagGGCGGCccGAUGg -3'
miRNA:   3'- gCACGACCGGGa--------GCGg-CUGCUG--CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.