miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 5' -57.9 NC_005261.1 + 47709 0.66 0.817881
Target:  5'- gUCGgCGGCGUCGggggccuccUCGGCggacaccagcaGCCCGCu -3'
miRNA:   3'- aAGCaGCCGCAGC---------AGUUGa----------CGGGCGu -5'
23623 5' -57.9 NC_005261.1 + 66039 0.66 0.817881
Target:  5'- --aGUCGGCGgccaCGgcCAGCcccggGCCCGCGg -3'
miRNA:   3'- aagCAGCCGCa---GCa-GUUGa----CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 59463 0.66 0.809181
Target:  5'- -cCG-CGGCGUCGgggggCAGC-GCCgGCGc -3'
miRNA:   3'- aaGCaGCCGCAGCa----GUUGaCGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 49255 0.66 0.791308
Target:  5'- -cCG-CGGCGgCGUCGGCgcgcacGUCCGCGa -3'
miRNA:   3'- aaGCaGCCGCaGCAGUUGa-----CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 63835 0.66 0.791308
Target:  5'- cUCGU-GGCG-CGccaccugCAGCUGCCCGaCAa -3'
miRNA:   3'- aAGCAgCCGCaGCa------GUUGACGGGC-GU- -5'
23623 5' -57.9 NC_005261.1 + 118933 0.66 0.791308
Target:  5'- -gCG-CGGCGcCGcgCGGCUGgCCGCGg -3'
miRNA:   3'- aaGCaGCCGCaGCa-GUUGACgGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 123831 0.66 0.790398
Target:  5'- ---uUCGGCGUCGUgCAgcgucgcGCUGCCUaGCGg -3'
miRNA:   3'- aagcAGCCGCAGCA-GU-------UGACGGG-CGU- -5'
23623 5' -57.9 NC_005261.1 + 107368 0.66 0.782152
Target:  5'- gUCGUgGGCGcCGg-GGC-GCCCGCGu -3'
miRNA:   3'- aAGCAgCCGCaGCagUUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 45619 0.66 0.782152
Target:  5'- -gCGgcgCGGCG-CGgcgCGGCggGCCCGCGc -3'
miRNA:   3'- aaGCa--GCCGCaGCa--GUUGa-CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 1516 0.67 0.772862
Target:  5'- cUCGUCGG-G-CGcCAGCUccagcgcgcgccGCCCGCAg -3'
miRNA:   3'- aAGCAGCCgCaGCaGUUGA------------CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 106108 0.67 0.772862
Target:  5'- gUCGgcCGGCGUCGcCGGCgcgcgcgcGCCgGCAa -3'
miRNA:   3'- aAGCa-GCCGCAGCaGUUGa-------CGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 86101 0.67 0.753916
Target:  5'- cUCGUCGGCGcccgggCGUCGgagcgcGCUGUacgaCGCGu -3'
miRNA:   3'- aAGCAGCCGCa-----GCAGU------UGACGg---GCGU- -5'
23623 5' -57.9 NC_005261.1 + 93963 0.67 0.753916
Target:  5'- --gGUCGGcCGUCGacgcCAACagcGCCCGCGu -3'
miRNA:   3'- aagCAGCC-GCAGCa---GUUGa--CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 11856 0.67 0.743308
Target:  5'- gUUCG-CGaGCGcgagCGUCAGCUgcggggcgagcccGCCCGCAc -3'
miRNA:   3'- -AAGCaGC-CGCa---GCAGUUGA-------------CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 323 0.68 0.714811
Target:  5'- -gCGgcugCGGCGgCGgcugCGGCgGCCCGCAg -3'
miRNA:   3'- aaGCa---GCCGCaGCa---GUUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 133163 0.68 0.714811
Target:  5'- -cCGUCGGCGUCGccgcCGACaa-CCGCGg -3'
miRNA:   3'- aaGCAGCCGCAGCa---GUUGacgGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 137994 0.68 0.714811
Target:  5'- -gCGgcugCGGCGgCGgcugCGGCgGCCCGCAg -3'
miRNA:   3'- aaGCa---GCCGCaGCa---GUUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 122659 0.68 0.688752
Target:  5'- -aCGUgGGCGcgaagagcaucacguUCGUCAGCUgcGCCUGCu -3'
miRNA:   3'- aaGCAgCCGC---------------AGCAGUUGA--CGGGCGu -5'
23623 5' -57.9 NC_005261.1 + 99237 0.68 0.684711
Target:  5'- -gCGUCGGCGUCGc-----GCCCGCc -3'
miRNA:   3'- aaGCAGCCGCAGCaguugaCGGGCGu -5'
23623 5' -57.9 NC_005261.1 + 105958 0.68 0.674579
Target:  5'- gUCGauggccUCGGCGcccagcgcggCGUCGACgccGCCCGCGa -3'
miRNA:   3'- aAGC------AGCCGCa---------GCAGUUGa--CGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.