Results 1 - 20 of 247 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23625 | 3' | -65.7 | NC_005261.1 | + | 74974 | 0.66 | 0.445324 |
Target: 5'- gGCCGCGCGCCC---GCGCC-GGGu- -3' miRNA: 3'- gCGGUGCGCGGGgggCGCGGaUCCuu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 73042 | 1.05 | 0.0006 |
Target: 5'- gCGCCACGCGCCCCCCGCGCCUAGGAAg -3' miRNA: 3'- -GCGGUGCGCGGGGGGCGCGGAUCCUU- -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 50091 | 0.66 | 0.445324 |
Target: 5'- uGaCCACGUgcacGCUgCCCGCGCCgcgcAGGGc -3' miRNA: 3'- gC-GGUGCG----CGGgGGGCGCGGa---UCCUu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 121 | 0.66 | 0.445324 |
Target: 5'- gCGCCgGCGcCGCCCCUgGUGCUcgcGGGGc -3' miRNA: 3'- -GCGG-UGC-GCGGGGGgCGCGGa--UCCUu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 62845 | 0.66 | 0.445324 |
Target: 5'- gGaCugGCGCgCCCCGCGCCa----- -3' miRNA: 3'- gCgGugCGCGgGGGGCGCGGauccuu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 114998 | 0.66 | 0.445324 |
Target: 5'- gGCCGcCGCGgCCCCgGCcCCgcGGAGg -3' miRNA: 3'- gCGGU-GCGCgGGGGgCGcGGauCCUU- -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 126548 | 0.66 | 0.445324 |
Target: 5'- nGCCACGCGCCgCCgUCGCGCg------ -3' miRNA: 3'- gCGGUGCGCGG-GG-GGCGCGgauccuu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 137804 | 0.66 | 0.445324 |
Target: 5'- gCGCCgGCGcCGCCCCUgGUGCUcgcGGGGc -3' miRNA: 3'- -GCGG-UGC-GCGGGGGgCGCGGa--UCCUu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 32523 | 0.66 | 0.445324 |
Target: 5'- gCGCCGCGCccggccccgGCCCCggCCGCGgCgcGGGc -3' miRNA: 3'- -GCGGUGCG---------CGGGG--GGCGCgGauCCUu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 39487 | 0.66 | 0.445324 |
Target: 5'- cCGCCGCGgacgaugauCGCCCCUCGC-CCgaagAGGc- -3' miRNA: 3'- -GCGGUGC---------GCGGGGGGCGcGGa---UCCuu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 58492 | 0.66 | 0.445324 |
Target: 5'- cCGgCGCGCGgCCgcuuuuggcgCCCGCGUCcAGGAGg -3' miRNA: 3'- -GCgGUGCGCgGG----------GGGCGCGGaUCCUU- -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 48847 | 0.66 | 0.454033 |
Target: 5'- cCGCCGCGCaGCaggCCCaGCGCCcGGGc- -3' miRNA: 3'- -GCGGUGCG-CGg--GGGgCGCGGaUCCuu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 137691 | 0.66 | 0.445324 |
Target: 5'- cCGCCccucgugcaGCGgGCCCCgCGCGaCCccgGGGGGu -3' miRNA: 3'- -GCGG---------UGCgCGGGGgGCGC-GGa--UCCUU- -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 30557 | 0.66 | 0.445324 |
Target: 5'- gGCCGC-CGCCgCCgGgGCCUcGGAc -3' miRNA: 3'- gCGGUGcGCGGgGGgCgCGGAuCCUu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 69281 | 0.66 | 0.445324 |
Target: 5'- cCGCC-CGCGCCgaCCCCGgCGC--GGGGc -3' miRNA: 3'- -GCGGuGCGCGG--GGGGC-GCGgaUCCUu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 33834 | 0.66 | 0.454033 |
Target: 5'- gGgCGCGgGCCCCCUGgCGCUgggcgggccGGGAGg -3' miRNA: 3'- gCgGUGCgCGGGGGGC-GCGGa--------UCCUU- -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 54255 | 0.66 | 0.454033 |
Target: 5'- uGCaGCGCGCCCUggcgCCGCGCacacuGGAc -3' miRNA: 3'- gCGgUGCGCGGGG----GGCGCGgau--CCUu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 60854 | 0.66 | 0.454033 |
Target: 5'- gGUCGCGCGCCgggccgagCCCGCGCCg----- -3' miRNA: 3'- gCGGUGCGCGGg-------GGGCGCGGauccuu -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 66373 | 0.66 | 0.454033 |
Target: 5'- gCGCCcCgGCGCCCCCuCGCuCUUguucAGGAAg -3' miRNA: 3'- -GCGGuG-CGCGGGGG-GCGcGGA----UCCUU- -5' |
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23625 | 3' | -65.7 | NC_005261.1 | + | 106898 | 0.66 | 0.454033 |
Target: 5'- gCGCC-UGCGUCgUCCGCGCCgcGGc- -3' miRNA: 3'- -GCGGuGCGCGGgGGGCGCGGauCCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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