miRNA display CGI


Results 1 - 20 of 247 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 7 0.66 0.428191
Target:  5'- cCGCCccucgugcaGCGgGCCCCgCGCGaCCccgGGGGGg -3'
miRNA:   3'- -GCGG---------UGCgCGGGGgGCGC-GGa--UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 121 0.66 0.445324
Target:  5'- gCGCCgGCGcCGCCCCUgGUGCUcgcGGGGc -3'
miRNA:   3'- -GCGG-UGC-GCGGGGGgCGCGGa--UCCUu -5'
23625 3' -65.7 NC_005261.1 + 211 0.66 0.403239
Target:  5'- cCGCCGC-CGCCCCUgGUGCuCgcGGGc -3'
miRNA:   3'- -GCGGUGcGCGGGGGgCGCG-GauCCUu -5'
23625 3' -65.7 NC_005261.1 + 647 0.7 0.256158
Target:  5'- cCGCCAgcgcCGCGUCCCCgGCGCCg----- -3'
miRNA:   3'- -GCGGU----GCGCGGGGGgCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 800 0.69 0.280996
Target:  5'- gCGCCGC-CGCCCCCCacgcGCGCCccuucccucccgauGGAGa -3'
miRNA:   3'- -GCGGUGcGCGGGGGG----CGCGGau------------CCUU- -5'
23625 3' -65.7 NC_005261.1 + 1163 0.69 0.29314
Target:  5'- -uCCACGCGCgCCggCCCGCGCCgcggccGGGGc -3'
miRNA:   3'- gcGGUGCGCG-GG--GGGCGCGGa-----UCCUu -5'
23625 3' -65.7 NC_005261.1 + 1205 0.68 0.333442
Target:  5'- gCGCgGCGCGgaCCCCCCGCcgaugccgccgucGCCggccccGGGAAg -3'
miRNA:   3'- -GCGgUGCGC--GGGGGGCG-------------CGGa-----UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 1317 0.66 0.425655
Target:  5'- gCGgCACGCGCUCCgggacgccgccgcgCCGCGCCUGc--- -3'
miRNA:   3'- -GCgGUGCGCGGGG--------------GGCGCGGAUccuu -5'
23625 3' -65.7 NC_005261.1 + 1524 0.66 0.403239
Target:  5'- gCGCCagcuccagcGCGCGCCgCCCGCagGCC-AGGu- -3'
miRNA:   3'- -GCGG---------UGCGCGGgGGGCG--CGGaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 2288 0.68 0.334159
Target:  5'- gCGCCGCcaGCGCCuCCCCGgGCagcGGGu -3'
miRNA:   3'- -GCGGUG--CGCGG-GGGGCgCGgauCCUu -5'
23625 3' -65.7 NC_005261.1 + 2370 0.67 0.387124
Target:  5'- gGCCACGCGCCgCCgcagcgGCGCgCUGGcGGc -3'
miRNA:   3'- gCGGUGCGCGGgGGg-----CGCG-GAUC-CUu -5'
23625 3' -65.7 NC_005261.1 + 2659 0.66 0.445324
Target:  5'- aGCgGCG-GCuCCCgCCGCGCUgGGGAc -3'
miRNA:   3'- gCGgUGCgCG-GGG-GGCGCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 3343 0.69 0.286698
Target:  5'- gCGCCGCgGCGCCCggCGCGCCggccuucAGGGc -3'
miRNA:   3'- -GCGGUG-CGCGGGggGCGCGGa------UCCUu -5'
23625 3' -65.7 NC_005261.1 + 3465 0.7 0.25038
Target:  5'- gCGCCGCGCGUCgaguaCCGCGCCagcGGGGc -3'
miRNA:   3'- -GCGGUGCGCGGgg---GGCGCGGa--UCCUu -5'
23625 3' -65.7 NC_005261.1 + 3577 0.72 0.180343
Target:  5'- gGCgCGCGCGCUCCaCCGCGUCgcGGGc -3'
miRNA:   3'- gCG-GUGCGCGGGG-GGCGCGGauCCUu -5'
23625 3' -65.7 NC_005261.1 + 3912 0.69 0.299694
Target:  5'- gCGCC-CGCGCCgCCgGCGCCggccuccGGGu -3'
miRNA:   3'- -GCGGuGCGCGGgGGgCGCGGau-----CCUu -5'
23625 3' -65.7 NC_005261.1 + 4513 0.67 0.356192
Target:  5'- aGUCGCGCGCCCgCgcggGCGCCgcggcgAGGGc -3'
miRNA:   3'- gCGGUGCGCGGGgGg---CGCGGa-----UCCUu -5'
23625 3' -65.7 NC_005261.1 + 4585 0.75 0.105078
Target:  5'- gGCgGgGCGCCCCCCgGCGCC-AGGGc -3'
miRNA:   3'- gCGgUgCGCGGGGGG-CGCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 4947 0.67 0.394323
Target:  5'- gCGCCGCggcccagGCGCCCCCgGcCGCggcguccuCUGGGGc -3'
miRNA:   3'- -GCGGUG-------CGCGGGGGgC-GCG--------GAUCCUu -5'
23625 3' -65.7 NC_005261.1 + 5142 0.66 0.428191
Target:  5'- gCGCuCGCGCGCCUCggcccggcgggCCGCGUCgagcAGGGc -3'
miRNA:   3'- -GCG-GUGCGCGGGG-----------GGCGCGGa---UCCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.