miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 137894 0.66 0.403239
Target:  5'- cCGCCGC-CGCCCCUgGUGCuCgcGGGc -3'
miRNA:   3'- -GCGGUGcGCGGGGGgCGCG-GauCCUu -5'
23625 3' -65.7 NC_005261.1 + 137804 0.66 0.445324
Target:  5'- gCGCCgGCGcCGCCCCUgGUGCUcgcGGGGc -3'
miRNA:   3'- -GCGG-UGC-GCGGGGGgCGCGGa--UCCUu -5'
23625 3' -65.7 NC_005261.1 + 137691 0.66 0.445324
Target:  5'- cCGCCccucgugcaGCGgGCCCCgCGCGaCCccgGGGGGu -3'
miRNA:   3'- -GCGG---------UGCgCGGGGgGCGC-GGa--UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 137577 0.67 0.371438
Target:  5'- cCGCCaccuaaGCGCGCCccucccccaCCCCGCGCCcaUAGa-- -3'
miRNA:   3'- -GCGG------UGCGCGG---------GGGGCGCGG--AUCcuu -5'
23625 3' -65.7 NC_005261.1 + 134992 0.66 0.43671
Target:  5'- gGCCGCcgggGCGCCCCUgGCGCggcGGGc -3'
miRNA:   3'- gCGGUG----CGCGGGGGgCGCGgauCCUu -5'
23625 3' -65.7 NC_005261.1 + 134867 0.68 0.306361
Target:  5'- gCGCC-CGCGCCCCCgCGgGCCc----- -3'
miRNA:   3'- -GCGGuGCGCGGGGG-GCgCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 134710 0.69 0.268043
Target:  5'- cCGCgGCGCGCCCagaCCCG-GCC-GGGAc -3'
miRNA:   3'- -GCGgUGCGCGGG---GGGCgCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 134315 0.68 0.338485
Target:  5'- uCGCCGCGCuggagcuggucucGCugcuguaccgcaagCCCCCGCGCCgccgcgcgGGGGg -3'
miRNA:   3'- -GCGGUGCG-------------CG--------------GGGGGCGCGGa-------UCCUu -5'
23625 3' -65.7 NC_005261.1 + 134150 0.69 0.270472
Target:  5'- gCGCCugGCGCCacccggggcugcugcUCCCGCuGCUUGcGGAGg -3'
miRNA:   3'- -GCGGugCGCGG---------------GGGGCG-CGGAU-CCUU- -5'
23625 3' -65.7 NC_005261.1 + 133748 0.69 0.286698
Target:  5'- aCGCCACGCGCgCgaucgacgCCCCGUGCCUc---- -3'
miRNA:   3'- -GCGGUGCGCG-G--------GGGGCGCGGAuccuu -5'
23625 3' -65.7 NC_005261.1 + 133704 0.68 0.320034
Target:  5'- aGCUGCGCGaCCCCgGCGCCgucuacgucGGGGc -3'
miRNA:   3'- gCGGUGCGCgGGGGgCGCGGa--------UCCUu -5'
23625 3' -65.7 NC_005261.1 + 132531 0.66 0.403239
Target:  5'- aGUacgaGCGCGCCCUCgCGCGCgaGGGc- -3'
miRNA:   3'- gCGg---UGCGCGGGGG-GCGCGgaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 132474 0.68 0.313141
Target:  5'- gCGCCGgcaGCGCCUCgCCGU-CCUGGGAc -3'
miRNA:   3'- -GCGGUg--CGCGGGG-GGCGcGGAUCCUu -5'
23625 3' -65.7 NC_005261.1 + 132364 0.67 0.36376
Target:  5'- cCGCgGCGCGCUCgCCGCGCuCgcGGc- -3'
miRNA:   3'- -GCGgUGCGCGGGgGGCGCG-GauCCuu -5'
23625 3' -65.7 NC_005261.1 + 131780 0.72 0.187819
Target:  5'- gCGCCGCugggccccgacgccGCGCCCgCCGCGCCUGacGGc- -3'
miRNA:   3'- -GCGGUG--------------CGCGGGgGGCGCGGAU--CCuu -5'
23625 3' -65.7 NC_005261.1 + 131624 0.72 0.176069
Target:  5'- gCGCCugGCGCCCgCCGCG---AGGAc -3'
miRNA:   3'- -GCGGugCGCGGGgGGCGCggaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 131563 0.67 0.379227
Target:  5'- uCGCCGuCGCccggcuGCCCCCCGCgacgGCCgAGGc- -3'
miRNA:   3'- -GCGGU-GCG------CGGGGGGCG----CGGaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 131434 0.72 0.188716
Target:  5'- gCGCCG-GCGCCCCCCuugcgccGCGCCUcgcGGGc- -3'
miRNA:   3'- -GCGGUgCGCGGGGGG-------CGCGGA---UCCuu -5'
23625 3' -65.7 NC_005261.1 + 131401 0.67 0.356192
Target:  5'- cCGCCACcgaGCCCCCCGcCGCUgccGGc- -3'
miRNA:   3'- -GCGGUGcg-CGGGGGGC-GCGGau-CCuu -5'
23625 3' -65.7 NC_005261.1 + 130586 0.76 0.097453
Target:  5'- cCGCCGCGCGgC-CCCGCGCCUGGc-- -3'
miRNA:   3'- -GCGGUGCGCgGgGGGCGCGGAUCcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.