miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 73042 1.05 0.0006
Target:  5'- gCGCCACGCGCCCCCCGCGCCUAGGAAg -3'
miRNA:   3'- -GCGGUGCGCGGGGGGCGCGGAUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 126526 0.78 0.070079
Target:  5'- gCGCC-CGCGCCCgCCGCGCCUcGGc- -3'
miRNA:   3'- -GCGGuGCGCGGGgGGCGCGGAuCCuu -5'
23625 3' -65.7 NC_005261.1 + 94042 0.77 0.073749
Target:  5'- gGCCcgGCGCGCCCCCCcagcgGCGCC-GGGAGc -3'
miRNA:   3'- gCGG--UGCGCGGGGGG-----CGCGGaUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 122367 0.77 0.075652
Target:  5'- gGCuCGCGCgGCCCCaCCGCgGCCUGGGGg -3'
miRNA:   3'- gCG-GUGCG-CGGGG-GGCG-CGGAUCCUu -5'
23625 3' -65.7 NC_005261.1 + 130586 0.76 0.097453
Target:  5'- cCGCCGCGCGgC-CCCGCGCCUGGc-- -3'
miRNA:   3'- -GCGGUGCGCgGgGGGCGCGGAUCcuu -5'
23625 3' -65.7 NC_005261.1 + 108325 0.76 0.099935
Target:  5'- cCGCCGCGUGCUCcgcgaCCCGCGCC-AGGGc -3'
miRNA:   3'- -GCGGUGCGCGGG-----GGGCGCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 122810 0.75 0.102219
Target:  5'- aGCCGCGCGCCCgccagcaCCCGCGCUgcGGc- -3'
miRNA:   3'- gCGGUGCGCGGG-------GGGCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 4585 0.75 0.105078
Target:  5'- gGCgGgGCGCCCCCCgGCGCC-AGGGc -3'
miRNA:   3'- gCGgUgCGCGGGGGG-CGCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 91497 0.75 0.107741
Target:  5'- cCGCCGCcCGCCCCgCGCGCCUGcuggucucGGAc -3'
miRNA:   3'- -GCGGUGcGCGGGGgGCGCGGAU--------CCUu -5'
23625 3' -65.7 NC_005261.1 + 110167 0.74 0.137736
Target:  5'- cCGCCAcCGCGCCCCCCGgGCggcaguuccgcgaCguugAGGAGg -3'
miRNA:   3'- -GCGGU-GCGCGGGGGGCgCG-------------Ga---UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 101008 0.74 0.138075
Target:  5'- aGCCGCGCGUCCagCGCGCCUGuGAAc -3'
miRNA:   3'- gCGGUGCGCGGGggGCGCGGAUcCUU- -5'
23625 3' -65.7 NC_005261.1 + 101845 0.73 0.141507
Target:  5'- cCGCCGCGCGCCCgCCGgcCGCCUGc--- -3'
miRNA:   3'- -GCGGUGCGCGGGgGGC--GCGGAUccuu -5'
23625 3' -65.7 NC_005261.1 + 58765 0.73 0.147161
Target:  5'- gCGCCGagaGCGCCCCCagCGCGCCggccagcgcgcgcAGGAAg -3'
miRNA:   3'- -GCGGUg--CGCGGGGG--GCGCGGa------------UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 11058 0.73 0.148606
Target:  5'- gCGCCGCccagGCGCCgCCagCGCGUCUAGGGAc -3'
miRNA:   3'- -GCGGUG----CGCGG-GGg-GCGCGGAUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 50575 0.72 0.167791
Target:  5'- gCGCCugGCGUCCgCCGCGagcgGGGAGg -3'
miRNA:   3'- -GCGGugCGCGGGgGGCGCgga-UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 131624 0.72 0.176069
Target:  5'- gCGCCugGCGCCCgCCGCG---AGGAc -3'
miRNA:   3'- -GCGGugCGCGGGgGGCGCggaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 76028 0.72 0.176069
Target:  5'- gCGCCGCggGCGCCCCgCGCGCCa----- -3'
miRNA:   3'- -GCGGUG--CGCGGGGgGCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 89430 0.72 0.176069
Target:  5'- gGCCGcCGgGCUCCCCGCGCCcgccgugcuGGAGu -3'
miRNA:   3'- gCGGU-GCgCGGGGGGCGCGGau-------CCUU- -5'
23625 3' -65.7 NC_005261.1 + 71943 0.72 0.180343
Target:  5'- uGCCGCGCGCCCCaCUGgCGUCggcgcGGGGc -3'
miRNA:   3'- gCGGUGCGCGGGG-GGC-GCGGa----UCCUu -5'
23625 3' -65.7 NC_005261.1 + 3577 0.72 0.180343
Target:  5'- gGCgCGCGCGCUCCaCCGCGUCgcGGGc -3'
miRNA:   3'- gCG-GUGCGCGGGG-GGCGCGGauCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.