miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 118197 0.72 0.180343
Target:  5'- gGCCcCGCGCCUgCCGCGCUgcgcGGGGc -3'
miRNA:   3'- gCGGuGCGCGGGgGGCGCGGa---UCCUu -5'
23625 3' -65.7 NC_005261.1 + 111850 0.72 0.184708
Target:  5'- gCGCgUGCGCGCCaaCCGCGCCUucguGGAGg -3'
miRNA:   3'- -GCG-GUGCGCGGggGGCGCGGAu---CCUU- -5'
23625 3' -65.7 NC_005261.1 + 97384 0.72 0.184708
Target:  5'- uCGCCGCGCGgCUUUCGCGCCUGccgcGGGc -3'
miRNA:   3'- -GCGGUGCGCgGGGGGCGCGGAU----CCUu -5'
23625 3' -65.7 NC_005261.1 + 55254 0.72 0.184708
Target:  5'- cCGCCGCgaggaggucuGCGCCCCCuggCGCGCCggaggcgGGGGc -3'
miRNA:   3'- -GCGGUG----------CGCGGGGG---GCGCGGa------UCCUu -5'
23625 3' -65.7 NC_005261.1 + 131780 0.72 0.187819
Target:  5'- gCGCCGCugggccccgacgccGCGCCCgCCGCGCCUGacGGc- -3'
miRNA:   3'- -GCGGUG--------------CGCGGGgGGCGCGGAU--CCuu -5'
23625 3' -65.7 NC_005261.1 + 131434 0.72 0.188716
Target:  5'- gCGCCG-GCGCCCCCCuugcgccGCGCCUcgcGGGc- -3'
miRNA:   3'- -GCGGUgCGCGGGGGG-------CGCGGA---UCCuu -5'
23625 3' -65.7 NC_005261.1 + 73463 0.72 0.189166
Target:  5'- gCGuCCGCGCGCCCCCCcuGgGCCgcGGc- -3'
miRNA:   3'- -GC-GGUGCGCGGGGGG--CgCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 117660 0.71 0.193719
Target:  5'- cCGCUAaGCGCCCCgCCGCGCCcggccGGGc -3'
miRNA:   3'- -GCGGUgCGCGGGG-GGCGCGGau---CCUu -5'
23625 3' -65.7 NC_005261.1 + 103108 0.71 0.193719
Target:  5'- gGCCA-GCGCCCCCgGCGCCa----- -3'
miRNA:   3'- gCGGUgCGCGGGGGgCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 10262 0.71 0.198367
Target:  5'- gGCCugGCGCCUUCUGC-CCUgAGGAc -3'
miRNA:   3'- gCGGugCGCGGGGGGCGcGGA-UCCUu -5'
23625 3' -65.7 NC_005261.1 + 127888 0.71 0.198367
Target:  5'- gCGCCG-GCGCCCgucgggCCCGgGCCUGGGc- -3'
miRNA:   3'- -GCGGUgCGCGGG------GGGCgCGGAUCCuu -5'
23625 3' -65.7 NC_005261.1 + 102817 0.71 0.198367
Target:  5'- cCGCCGCGCGCCggucugcgCCUCGCGCCgcgccacgugcUGGGc- -3'
miRNA:   3'- -GCGGUGCGCGG--------GGGGCGCGG-----------AUCCuu -5'
23625 3' -65.7 NC_005261.1 + 83329 0.71 0.202634
Target:  5'- gCGCCACGcCGCCCgCCGCcaccgugGCCcgcAGGAAg -3'
miRNA:   3'- -GCGGUGC-GCGGGgGGCG-------CGGa--UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 39602 0.71 0.203113
Target:  5'- gCGCCGCGCGCCCCCgC-CGCCc----- -3'
miRNA:   3'- -GCGGUGCGCGGGGG-GcGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 101615 0.71 0.203113
Target:  5'- cCGCCucuaGCGCCUCUCGCGCCgcGGc- -3'
miRNA:   3'- -GCGGug--CGCGGGGGGCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 103378 0.71 0.203113
Target:  5'- gGCCGCGCGCCg-CCGCGCCgcGGc- -3'
miRNA:   3'- gCGGUGCGCGGggGGCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 28591 0.71 0.203113
Target:  5'- gCGCCgGCGgGCCgCCCGCGCCgagcuggcGGAGc -3'
miRNA:   3'- -GCGG-UGCgCGGgGGGCGCGGau------CCUU- -5'
23625 3' -65.7 NC_005261.1 + 36815 0.71 0.203113
Target:  5'- gCGCUACGUGCCCCgguaugcggugCCgGCGCCcGGGGg -3'
miRNA:   3'- -GCGGUGCGCGGGG-----------GG-CGCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 67183 0.71 0.206493
Target:  5'- gGCCACGUGCCCCCCcagGCacacgcgcauccacGCCcGGGGc -3'
miRNA:   3'- gCGGUGCGCGGGGGG---CG--------------CGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 68541 0.71 0.207956
Target:  5'- gCGcCCGCGCGCCCCCUGCuGCgcGGGc- -3'
miRNA:   3'- -GC-GGUGCGCGGGGGGCG-CGgaUCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.